View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9981_low_27 (Length: 243)
Name: NF9981_low_27
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 328178 - 328417
Alignment:
| Q |
1 |
tgtgcaagttcccaagagaccactgagccatctatttgtttaactccaggtctttattcttttctccataaacttatattctcaaatatcctacgagatg |
100 |
Q |
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| T |
328178 |
tgtgcaagtttccaagagaccactgagccatctatttgtttaactccaggtctttattcttttctccataaacttatattctcaaatatcctaggagatg |
328277 |
T |
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| Q |
101 |
aaatattatctaccttctcaattattt--------------tcctttggctcacttggtaatgtgtgatgtgttgttgttgactcttacattcttttgga |
186 |
Q |
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| T |
328278 |
aaatattatctaccttctcaattattttccttttgcaagcatcctttggctcacttggtaatgtgtgatgtgttgttgttgactcttacattcttttgga |
328377 |
T |
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| Q |
187 |
taaaataaatgatatatcttgaacctttgattattactac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
328378 |
taaaataaatgatatatcttgaacctttgattattactac |
328417 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27412601 - 27412548
Alignment:
| Q |
1 |
tgtgcaagttcccaagagaccactgagccatctatttgtttaactccaggtctt |
54 |
Q |
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|||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||| |
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| T |
27412601 |
tgtgcaggtttccaagagaccactgaaccatcaatttgcttaactccaggtctt |
27412548 |
T |
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