View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9981_low_29 (Length: 240)

Name: NF9981_low_29
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9981_low_29
NF9981_low_29
[»] chr8 (6 HSPs)
chr8 (17-240)||(38454026-38454249)
chr8 (35-231)||(39847997-39848190)
chr8 (135-236)||(34534115-34534216)
chr8 (133-223)||(38632298-38632388)
chr8 (135-240)||(34916678-34916783)
chr8 (21-86)||(38632425-38632490)
[»] chr4 (1 HSPs)
chr4 (24-236)||(44474095-44474307)
[»] chr6 (2 HSPs)
chr6 (135-239)||(14905186-14905290)
chr6 (135-236)||(14904772-14904873)
[»] chr5 (3 HSPs)
chr5 (135-239)||(2997941-2998045)
chr5 (176-239)||(2998561-2998624)
chr5 (144-240)||(2997733-2997829)
[»] chr3 (1 HSPs)
chr3 (136-198)||(7046903-7046965)
[»] chr2 (2 HSPs)
chr2 (135-227)||(32716649-32716741)
chr2 (135-227)||(32716856-32716948)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 38454026 - 38454249
Alignment:
Q  17 agatacctccatcctgccaagtttgggtgccattaccatgacggcaatctctagagaactcaccctcataatttggtcctcatggatgtaagaacaatcg 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  38454026 agatacctccatccttccaagtttgggtgccattaccatgacggcaatctccagagaactcaccctcataatttggtcctcatggatgtaagaataatcg 38454125  T
Q  117 tcctttccttgctatatctccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaag 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38454126 tcctttccttgccatatctccatcaatccaatcaccctcatatactgatccacatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaag 38454225  T
Q  217 ttaccaacgtaaacatccccattt 240  Q
    ||||||||||| ||||||||||||    
T  38454226 ttaccaacgtagacatccccattt 38454249  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 39848190 - 39847997
Alignment:
Q  35 aagtttgggtgccattaccatgacggcaatctctagagaactcaccctcataatttggtcctcatggatgtaagaacaatcgtcctttccttgctatatc 134  Q
    |||||||||||||||| |||||||||| ||  | | |||| ||||||||||| ||   |||| |||| |||| ||||||||   |||||| ||   ||||    
T  39848190 aagtttgggtgccattgccatgacggcgattcccaaagaattcaccctcatacttgtctcctgatggctgtatgaacaatc---ctttccctgtcttatc 39848094  T
Q  135 tccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtaaaca 231  Q
    |||||||| |||||||||| |||||| ||||||   |||| ||||| ||||||  |||||||||  |||| ||||||||| |||||||| |||||||    
T  39848093 tccatcaacccaatcacccacatatattgatccatctgaccatgtgtactttcttttgccatgagcaagtccatccttgatgttaccaatgtaaaca 39847997  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 34534115 - 34534216
Alignment:
Q  135 tccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtaaacatcc 234  Q
    |||||||| |||||| |||||||||| || |||   |||| ||||| |||| |||||||||||| |||||||| ||||||||||||||| ||| ||||||    
T  34534115 tccatcaacccaatcgccctcatatattgttccatctgaccatgtgtacttcccgttgccatgacaaagttcacccttgaagttaccaatgtagacatcc 34534214  T
Q  235 cc 236  Q
    ||    
T  34534215 cc 34534216  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 38632388 - 38632298
Alignment:
Q  133 tctccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaa 223  Q
    ||||| |||| ||||||||||||||||  ||||||   |||| || || |||||||| ||||||||  ||||||| |||||||||||||||    
T  38632388 tctccgtcaacccaatcaccctcatatgttgatccatctgaccatttgcactttccgctgccatgacgaagttcacccttgaagttaccaa 38632298  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 34916678 - 34916783
Alignment:
Q  135 tccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtaaacatcc 234  Q
    |||||||| ||| |||||||| |||| || |||   || | ||||| |||||||  ||||||| | ||||||| ||||||| ||||||| ||| ||||||    
T  34916678 tccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttcccatgccatggagaagttcacccttgaatttaccaatgtagacatcc 34916777  T
Q  235 ccattt 240  Q
    ||||||    
T  34916778 ccattt 34916783  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 38632490 - 38632425
Alignment:
Q  21 acctccatcctgccaagtttgggtgccattaccatgacggcaatctctagagaactcaccctcata 86  Q
    |||| |||||| ||||||||||||| |||| |||||||| ||||  ||| |||| |||||||||||    
T  38632490 accttcatccttccaagtttgggtgtcattgccatgacgacaattcctaaagaattcaccctcata 38632425  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 44474307 - 44474095
Alignment:
Q  24 tccatcctgccaagtttgggtgccattaccatgacggcaatctctagagaactcaccctcataatttggtcctcatggatgtaagaacaatcgtcctttc 123  Q
    |||||||| | ||||| |||||||||||||||||||| |||  | |||||| || |||||||| |||| | || |||| ||||  |||| ||||||||||    
T  44474307 tccatccttcaaagttagggtgccattaccatgacggaaattcccagagaagtcgccctcatactttgatgctgatggctgtaccaacagtcgtcctttc 44474208  T
Q  124 cttgctatatctccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaa 223  Q
    | ||| |  | ||||||||   ||||||||||||||| ||||||   |||| ||||| ||||||||||||||| |  |||| ||||||||||| ||||||    
T  44474207 cctgccacctttccatcaacaaaatcaccctcatatattgatccatctgaccatgtgtactttccgttgccatcaggaagtccatccttgaagataccaa 44474108  T
Q  224 cgtaaacatcccc 236  Q
    |||| ||||||||    
T  44474107 cgtagacatcccc 44474095  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 14905186 - 14905290
Alignment:
Q  135 tccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtaaacatcc 234  Q
    ||||| || ||||||||||||||||| |  ||||  |||| ||||| ||||||| |||||||| ||||| | || || ||||||||||||||| ||||||    
T  14905186 tccataaacccaatcaccctcatatatttctccctctgaccatgtgcactttcccttgccatggaaaagattattctcgaagttaccaacgtagacatcc 14905285  T
Q  235 ccatt 239  Q
    |||||    
T  14905286 ccatt 14905290  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 14904772 - 14904873
Alignment:
Q  135 tccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtaaacatcc 234  Q
    |||||||| ||||||||||||||||| |  |||    ||| ||||| | ||||| |||||||| ||||| |||| |||||||||||||| ||| ||||||    
T  14904772 tccatcaacccaatcaccctcatatatttttccattcgaccatgtgtattttcctttgccatggaaaagatcattcttgaagttaccaatgtagacatcc 14904871  T
Q  235 cc 236  Q
    ||    
T  14904872 cc 14904873  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 2998045 - 2997941
Alignment:
Q  135 tccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtaaacatcc 234  Q
    |||||||| ||||||||||||||||| || ||| | |||| ||||| ||||||| |||||||| ||||| ||||  |  |||||||||| | | ||||||    
T  2998045 tccatcaacccaatcaccctcatatattgttccacttgaccatgtgtactttcccttgccatggaaaagatcattttcaaagttaccaatgaagacatcc 2997946  T
Q  235 ccatt 239  Q
    |||||    
T  2997945 ccatt 2997941  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 2998624 - 2998561
Alignment:
Q  176 atgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtaaacatccccatt 239  Q
    ||||| ||||||| |||||||||||||  |||| || ||||||||||||||| | |||||||||    
T  2998624 atgtgtactttcccttgccatgaaaaatatcattctcgaagttaccaacgtagatatccccatt 2998561  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 2997829 - 2997733
Alignment:
Q  144 ccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtaaacatccccattt 240  Q
    ||||||||||||||| | || ||| | |||| ||||| ||||||| ||||||||||||| ||   |||| || ||||||| ||| |||| |||||||    
T  2997829 ccaatcaccctcatagattgttccacttgaccatgtgtactttcccttgccatgaaaaaattttcccttaaaattaccaatgtagacatgcccattt 2997733  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 7046903 - 7046965
Alignment:
Q  136 ccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatga 198  Q
    |||||||||||||| |||||||||| ||||||   |||| ||||| | |||||||||||||||    
T  7046903 ccatcaatccaatctccctcatatattgatccatctgaccatgtgtagtttccgttgccatga 7046965  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 32716741 - 32716649
Alignment:
Q  135 tccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgta 227  Q
    |||||||| ||||||||||||||||| || |||   | || | ||| ||||||| |||||||| ||||| |||  || |||||||||||||||    
T  32716741 tccatcaacccaatcaccctcatatattgttccatttaaccacgtgtactttcccttgccatggaaaagatcactctcgaagttaccaacgta 32716649  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 32716948 - 32716856
Alignment:
Q  135 tccatcaatccaatcaccctcatatactgatccccatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgta 227  Q
    |||||||| ||||||||| || |||| || |||   |||| ||||| ||||||| |||||||| ||||| |||  || |||||||||||||||    
T  32716948 tccatcaacccaatcaccatcgtatattgttccatgtgaccatgtgtactttcctttgccatggaaaagatcactctcgaagttaccaacgta 32716856  T

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