View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9981_low_3 (Length: 423)
Name: NF9981_low_3
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 45102115 - 45102528
Alignment:
| Q |
1 |
tacttggatgtaaaatctcaaataattgcctcattttaaatgtgataattgcctcattattattcctcaagtttatggtctcaatgcattttaaatgcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45102115 |
tacttggatgtaaaatctcaaataattgcctcattttaaatgtgataattgccttattattattcctcaagtttatggtctcaatgcattttaaatgcct |
45102214 |
T |
|
| Q |
101 |
catttttactaaatagtataaatctcaaataatttgtattataa------aaacacgtatagaaaagtatgtgaaatatcatatcaacttttatacattt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45102215 |
catttttactaaatagtataaatctcaaataatttgtattataagtaccaaaacacgtatagaaaagtatgtgaaatatcatatcaacttttatacattt |
45102314 |
T |
|
| Q |
195 |
tttcactctattaccagttctggaaatgaagcattgtgtaaacgtgacaatgttgaatgtcctttccaaattgaaaagcttcgttcacatgtttttggtc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45102315 |
tttcactctattaccagttctggaaatgaagcattgtgtaaacgtgaccatgttgaatgtcctttccaaattgaaaagcttcgttcacatgtttttggtc |
45102414 |
T |
|
| Q |
295 |
aggagactttactcgtggcctctgagctgctggtaagatatgcgtccttttctgtttagggaccaaatcaatcgtctttttctcttcagctttcacactt |
394 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45102415 |
aggagactttactcgtggcctctgagctgctggtaagatatgcgtccttttctgtttagggaccaaatcaatcgtctttttctcttcagctttcacactt |
45102514 |
T |
|
| Q |
395 |
tctcattcttccct |
408 |
Q |
| |
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|||||||||||||| |
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| T |
45102515 |
tctcattcttccct |
45102528 |
T |
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