View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9981_low_30 (Length: 239)

Name: NF9981_low_30
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9981_low_30
NF9981_low_30
[»] chr4 (32 HSPs)
chr4 (1-217)||(27516772-27516988)
chr4 (1-217)||(27466575-27466798)
chr4 (1-217)||(27473648-27473869)
chr4 (1-217)||(27500501-27500715)
chr4 (1-211)||(27526281-27526496)
chr4 (1-211)||(27476443-27476658)
chr4 (10-217)||(27523566-27523778)
chr4 (1-191)||(27513968-27514157)
chr4 (16-191)||(27469228-27469408)
chr4 (19-72)||(27412436-27412489)
chr4 (21-72)||(27570373-27570424)
chr4 (19-72)||(27566274-27566327)
chr4 (18-72)||(27420167-27420221)
chr4 (10-71)||(27557255-27557317)
chr4 (19-72)||(27425576-27425629)
chr4 (146-211)||(27498321-27498386)
chr4 (150-211)||(27501227-27501288)
chr4 (16-72)||(27415384-27415440)
chr4 (151-203)||(27415517-27415569)
chr4 (154-211)||(27479812-27479872)
chr4 (1-77)||(27498167-27498244)
chr4 (154-191)||(27505894-27505931)
chr4 (151-191)||(27420301-27420341)
chr4 (154-217)||(27486894-27486960)
chr4 (155-203)||(27566146-27566194)
chr4 (22-71)||(27431468-27431518)
chr4 (162-204)||(27563543-27563585)
chr4 (10-63)||(27445116-27445169)
chr4 (1-62)||(27489314-27489375)
chr4 (2-74)||(27508109-27508182)
chr4 (151-203)||(27412563-27412615)
chr4 (151-191)||(27425705-27425745)
[»] chr5 (1 HSPs)
chr5 (16-204)||(1754417-1754604)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27516988 - 27516772
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacattccaactcattggaagttaaaaaacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27516988 tttgttaagtatccgttcatctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacattccaactcatttgaagttaaaaaacttg 27516889  T
Q  101 agtcttttctatatacaagtctgtctattttagaccaatctcttattttcaacacatacaacaatgggttttcgtttacctagtatcatcaaaaggtcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27516888 agtcttttctatatacaagtctgtctattttagaccaatctcttattttcaacacatacaacaatgggttttcgtttacctagtatcatcaaaaggtcat 27516789  T
Q  201 catcttcaaaatctgtg 217  Q
    |||||||||||||||||    
T  27516788 catcttcaaaatctgtg 27516772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 27466575 - 27466798
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacattccaa--ctcattggaagttaaaaaact 98  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| |||||| |||||||    
T  27466575 tttgttaagtatcctttcatctatatatattcatggctgcaagcctttagcaccaacacaaatcattcacattccaactctcatttgaagttcaaaaact 27466674  T
Q  99 tgagtcttttctatatacaagtctgtctattttagaccaatctcttattttcaacacataca-----acaatgggttttcgtttacctagtatcatcaaa 193  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||     ||||||||||| |||||||||||||||||||||    
T  27466675 tgactcttttctatatacaagtttgtctattttagaccaatctcttcttttcaacacatacaatacgacaatgggtttccgtttacctagtatcatcaaa 27466774  T
Q  194 aggtcatcatcttcaaaatctgtg 217  Q
    ||||||||||||||||||||||||    
T  27466775 aggtcatcatcttcaaaatctgtg 27466798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 27473648 - 27473869
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacattccaact--cattggaagttaaaaaact 98  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||  |||| |||||| |||||||    
T  27473648 tttgctaagtatcctttcatctatatatattcatggctgcaagcctttagcatcaacacaaatcattcacattccaactcccatttgaagttcaaaaact 27473747  T
Q  99 tgagtcttttctatatacaagtctgtctattttagaccaatctcttattttcaacac-----atacaacaatgggttttcgtttacctagtatcatcaaa 193  Q
      ||||||||||||||||||||||||||||||||||||||||| || |||| |||||     ||||||||||||||||||||||||| ||||||||||||    
T  27473748 --agtcttttctatatacaagtctgtctattttagaccaatcttttctttttaacacatacaatacaacaatgggttttcgtttaccaagtatcatcaaa 27473845  T
Q  194 aggtcatcatcttcaaaatctgtg 217  Q
    ||| ||||||||||||||||||||    
T  27473846 agggcatcatcttcaaaatctgtg 27473869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27500715 - 27500501
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacattccaactcattggaagttaaaaaacttg 100  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||||||||| ||| || | |||||||    
T  27500715 tttgttaagtatcctttcatctatatatatccatggttgcaagcctttagcaccaacaaaaatcattcacattccaactcatttgaaattcagaaacttg 27500616  T
Q  101 agtcttttctatatacaagtctgtctattttagaccaatctcttattttcaacacatacaacaatgggttttcgtttacctagtatcatcaaaaggtcat 200  Q
    | ||||  |||||||||| ||| ||| |||||||||||||  || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27500615 actctt--ctatatacaactctttcttttttagaccaatccattctttttaacacgtacaacaatgggttttcgtttacctagtatcatcaaaaggtcat 27500518  T
Q  201 catcttcaaaatctgtg 217  Q
    |||||||||||||||||    
T  27500517 catcttcaaaatctgtg 27500501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 27526496 - 27526281
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaa--gcatttagcaccaacacaaa-tcattcacattccaactcattggaagttaaaaaac 97  Q
    |||||||  ||||| |||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||| ||||  |||  |||||| | ||||    
T  27526496 tttgttacatatcctttcatctatatatattcatggctgcaaaagcatttagcaccaacaaaaaatcattcacatcccaaggcatctgaagttcagaaac 27526397  T
Q  98 ttgagtcttttctatatacaagtctgtctattttagaccaatctcttattttcaacacataca----acaatgggttttcgtttacctagtatcatcaaa 193  Q
    |||||||||  ||| |||||||||| ||| ||||||||||||||||  |||||||||||||||    |||||||||||||||||||||||||||||||||    
T  27526396 ttgagtctt--ctaaatacaagtctttcttttttagaccaatctctccttttcaacacatacatacaacaatgggttttcgtttacctagtatcatcaaa 27526299  T
Q  194 aggtcatcatcttcaaaa 211  Q
    ||| ||||||||||||||    
T  27526298 agggcatcatcttcaaaa 27526281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27476443 - 27476658
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaa--gcatttagcaccaacacaaa-tcattcacattccaactcattggaagttaaaaaac 97  Q
    |||||||| ||||| ||||||||||||||||  || ||||||  |||||||||||||||| ||| | |||||||| ||||  |||| ||| || | ||||    
T  27476443 tttgttaaatatcctttcatctatatatattattgactgcaaaagcatttagcaccaacaaaaaataattcacatcccaaggcatttgaaattcagaaac 27476542  T
Q  98 ttgagtcttttctatatacaagtctgtctattttagaccaatctcttattttcaacacat----acaacaatgggttttcgtttacctagtatcatcaaa 193  Q
    |||||||||  |||||||||| | | ||| ||||||| |||| |||| ||||||||||||    |||||||||||||| |||||||||||||||||||||    
T  27476543 ttgagtctt--ctatatacaactgtttcttttttagatcaatatcttcttttcaacacatacatacaacaatgggtttccgtttacctagtatcatcaaa 27476640  T
Q  194 aggtcatcatcttcaaaa 211  Q
    ||| ||||||||||||||    
T  27476641 aggacatcatcttcaaaa 27476658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 27523778 - 27523566
Alignment:
Q  10 tatccgttcatctatatatattcatggctgcaagcatttagcaccaac-acaaatcattcacattccaactcattggaagttaaaaaacttgagtctttt 108  Q
    ||||| ||||||||||||||  ||||||  |||||||||||||||||| | ||||||||||||| |||| ||| | |||||| | |||||||||||  ||    
T  27523778 tatcctttcatctatatataaacatggcatcaagcatttagcaccaacaaaaaatcattcacatcccaagtcagttgaagttcagaaacttgagtc--tt 27523681  T
Q  109 ctatatacaagtctgtctattttagaccaatctcttattttcaac----acatacaacaatgggttttcgtttacctagtatcatca---aaaggtcatc 201  Q
    ||||| |||| ||| ||| ||||||||||||||  |  ||| |||    |||||||||||||||||||||||||| |||||||||||    |||| ||||    
T  27523680 ctatacacaactctttct-ttttagaccaatcttctccttttaactcatacatacaacaatgggttttcgtttacgtagtatcatcagatcaagggcatc 27523582  T
Q  202 atcttcaaaatctgtg 217  Q
    |||||||||| |||||    
T  27523581 atcttcaaaagctgtg 27523566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 27514157 - 27513968
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaa--gcatttagcaccaacacaaa-tcattcacattccaactcattggaagttaaaaaac 97  Q
    |||||||  ||||| |||||||||||||||| | ||||||||  |||||||||||||||| ||| |||||||| | ||||  |||| |||||| | ||||    
T  27514157 tttgttacatatcctttcatctatatatattaaaggctgcaaaagcatttagcaccaacaaaaaatcattcacctcccaaggcatttgaagttcagaaac 27514058  T
Q  98 ttgagtcttttctatatacaagtctgtctattttagaccaatctcttattttcaacacatacaacaatgggttttcgtttacctagtatcatca 191  Q
    |||||||||  ||||| |||| ||| | |  |||||||||||||  | |||| ||  |||||||||||||||||||||||||| ||||||||||    
T  27514057 ttgagtctt--ctatacacaactcttttt--tttagaccaatcttctctttttaattcatacaacaatgggttttcgtttaccaagtatcatca 27513968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 27469228 - 27469408
Alignment:
Q  16 ttcatctatatatattcatggctgcaa--gcatttagcaccaac-acaaatcattcacattccaactcattggaagttaaaaaacttgagtcttttctat 112  Q
    |||||||||||||||| ||||||||||  |||||||| |||||| | ||| ||||||||| ||||  |||| ||| || | |||||||||||  ||||||    
T  27469228 ttcatctatatatattaatggctgcaaaggcatttaggaccaacaaaaaaccattcacatcccaaggcatttgaaattcagaaacttgagtc--ttctat 27469325  T
Q  113 atacaagtctgtctattttagaccaatctcttattttcaac----acatacaacaatgggttttcgtttacctagtatcatca 191  Q
    |||||| ||| ||| ||||||||||| ||  | |||| |||    ||||||||||||||||||||||||||| ||| ||||||    
T  27469326 atacaactctttcttttttagaccaagcttctcttttaaacacatacatacaacaatgggttttcgtttaccaagtctcatca 27469408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 27412436 - 27412489
Alignment:
Q  19 atctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 72  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  27412436 atctatatatattcatggctgcaagcatttaggacaaacacaaatcattcacat 27412489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 27570424 - 27570373
Alignment:
Q  21 ctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 72  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  27570424 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacat 27570373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 27566327 - 27566274
Alignment:
Q  19 atctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 72  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||||||||    
T  27566327 atctatatatattcatggttacaagcatttaggaccaacacaaatcattcacat 27566274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 27420167 - 27420221
Alignment:
Q  18 catctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 72  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||    
T  27420167 catctatatatattcaaggctacaagcatttaggaccaacacaaaacattcacat 27420221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 27557255 - 27557317
Alignment:
Q  10 tatccgttcatctatatatattcatggctgcaagcatttagcaccaacac-aaatcattcaca 71  Q
    ||||| ||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||    
T  27557255 tatcctttcatctatatatattcatagttgcaagcatttaggaccaacacaaaatcattcaca 27557317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 27425576 - 27425629
Alignment:
Q  19 atctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 72  Q
    ||||||||||||| | |||| ||||||||||| |||||||||||||||||||||    
T  27425576 atctatatatattaaaggctacaagcatttaggaccaacacaaatcattcacat 27425629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 27498321 - 27498386
Alignment:
Q  146 ttttcaacacatacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcatcttcaaaa 211  Q
    |||||||||||||| | ||||||||||||||||||  ||||||||| |||| |||| |||||||||    
T  27498321 ttttcaacacatacgaaaatgggttttcgtttaccaggtatcatcagaaggacatcgtcttcaaaa 27498386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 27501227 - 27501288
Alignment:
Q  150 caacacatacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcatcttcaaaa 211  Q
    |||||||||||| ||||||||||||||||||| ||||| | | |||| ||||||||||||||    
T  27501227 caacacatacaagaatgggttttcgtttacctggtatcctaagaaggacatcatcttcaaaa 27501288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 27415384 - 27415440
Alignment:
Q  16 ttcatctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 72  Q
    ||||||||| |||||||| |||| ||||||||||| ||||||||||| |||||||||    
T  27415384 ttcatctatttatattcaaggctacaagcatttaggaccaacacaaaacattcacat 27415440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 27415517 - 27415569
Alignment:
Q  151 aacacatacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcat 203  Q
    ||||||||||||||||||||||||| | ||||||||||||| || ||||||||    
T  27415517 aacacatacaacaatgggttttcgtgtccctagtatcatcagaaagtcatcat 27415569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 27479812 - 27479872
Alignment:
Q  154 acatacaacaatgggttttcgtttacctagtatcatca---aaaggtcatcatcttcaaaa 211  Q
    ||||||||||||||||||||||||||| ||||||||||    |||| ||||||||||||||    
T  27479812 acatacaacaatgggttttcgtttaccaagtatcatcagatcaagggcatcatcttcaaaa 27479872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27498167 - 27498244
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaagcatttagcaccaacac-aaatcattcacattccaa 77  Q
    |||||||  ||||| |||||||||||||||||||| || |||||| |||| || ||||| |||||||||||| |||||    
T  27498167 tttgttacatatcctttcatctatatatattcatgccttcaagcagttaggacaaacacaaaatcattcacaatccaa 27498244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 27505931 - 27505894
Alignment:
Q  154 acatacaacaatgggttttcgtttacctagtatcatca 191  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  27505931 acatacaacaatgggttttcgtttaccaagtatcatca 27505894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 27420301 - 27420341
Alignment:
Q  151 aacacatacaacaatgggttttcgtttacctagtatcatca 191  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  27420301 aacacatacaacaatgggttttcgtttccctggtatcatca 27420341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 27486894 - 27486960
Alignment:
Q  154 acatacaacaatgggttttcgtttacctagtatcatca---aaaggtcatcatcttcaaaatctgtg 217  Q
    |||||||||||||||||| |||||||| ||||||||||    |||| |||||||||||||| |||||    
T  27486894 acatacaacaatgggtttccgtttaccaagtatcatcagatcaagggcatcatcttcaaaagctgtg 27486960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 27566194 - 27566146
Alignment:
Q  155 catacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcat 203  Q
    |||||| |||||||||||||||| |||||||| ||||||||| ||||||    
T  27566194 catacagcaatgggttttcgtttccctagtattatcaaaagggcatcat 27566146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 27431518 - 27431468
Alignment:
Q  22 tatatatattcatggctgcaagcatttagcaccaacacaa-atcattcaca 71  Q
    ||||||||||||||||||||||| ||||  |||||||||| ||||||||||    
T  27431518 tatatatattcatggctgcaagcttttataaccaacacaatatcattcaca 27431468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 27563585 - 27563543
Alignment:
Q  162 caatgggttttcgtttacctagtatcatcaaaaggtcatcatc 204  Q
    |||||||||||||||||||| ||||||| | ||||||||||||    
T  27563585 caatgggttttcgtttacctggtatcattagaaggtcatcatc 27563543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 27445169 - 27445116
Alignment:
Q  10 tatccgttcatctatatatattcatggctgcaagcatttagcaccaacacaaat 63  Q
    ||||| |||||||||||||||| ||| ||||||||||| || |||||| |||||    
T  27445169 tatcctttcatctatatatattaatgactgcaagcattaagaaccaactcaaat 27445116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 27489375 - 27489314
Alignment:
Q  1 tttgttaagtatccgttcatctatatatattcatggctgcaagcatttagcaccaacacaaa 62  Q
    |||||||  ||||| ||||| ||||||||||||| |||| |||||||||| ||||| |||||    
T  27489375 tttgttacttatcctttcatgtatatatattcattgctgaaagcatttaggaccaagacaaa 27489314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 27508182 - 27508109
Alignment:
Q  2 ttgttaagtatccgttcatctatatatattcatggctgc-aagcatttagcaccaacacaaatcattcacattc 74  Q
    |||||| |||||| |||| ||||||||||||||| |||| || ||||| | |||||||||||||  ||||||||    
T  27508182 ttgttatgtatcctttcagctatatatattcatgactgctaaacatttcgaaccaacacaaatctctcacattc 27508109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 27412563 - 27412615
Alignment:
Q  151 aacacatacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcat 203  Q
    ||||||||||| |||||||||||||||  || ||||||||| |||| ||||||    
T  27412563 aacacatacaaaaatgggttttcgtttctctggtatcatcagaagggcatcat 27412615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 27425705 - 27425745
Alignment:
Q  151 aacacatacaacaatgggttttcgtttacctagtatcatca 191  Q
    |||||||||||||||||||||||||||  || |||||||||    
T  27425705 aacacatacaacaatgggttttcgttttgctggtatcatca 27425745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 1754604 - 1754417
Alignment:
Q  16 ttcatctatatatattcatggctgcaagcatttagcaccaacacaaa-tcattcacattccaactcattggaagttaaaaaacttgagtcttttctatat 114  Q
    |||||||||||||| ||||| ||  |||||||||| ||||||||||| |||||||||||||||  |||| ||| || | |||||||||||||  ||||||    
T  1754604 ttcatctatatatagtcatgccttgaagcatttaggaccaacacaaaatcattcacattccaaggcatttgaaattcagaaacttgagtctt--ctatat 1754507  T
Q  115 acaagtctgtctattttagaccaatctcttattttcaaca--catacaacaatgggttttcgtttacctagtatcatcaaaaggtcatcatc 204  Q
    |||| ||| | |  ||||| ||||| |||| |||||| ||  |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1754506 acaaatcttttt--tttagtccaatatcttcttttcatcagacatacaacaatgggttttcgtttacctagtatcatcaaaaggacatcatc 1754417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University