View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9981_low_31 (Length: 239)
Name: NF9981_low_31
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4308246 - 4308024
Alignment:
| Q |
1 |
attcgattttccttattgaatcgaaccatgaaccatcctagttatgagagtggaaatataaagctttatgttgtggaggaatttttctttttcttgtgaa |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4308246 |
attcaattttccttattgaatcaaaccatgaaccatcctagttatgagagtggaaatataaagctttatgttgtggaggaatttttcttcttcttgtgaa |
4308147 |
T |
|
| Q |
101 |
caaaagcttaaatgaaacttatattaacacataacaagtattctatccagcataacgtgtactagagtaaaataccacaattttacaaacaaagcatacc |
200 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4308146 |
caa--gctaaaatgaaacttatattaacacataacaagtattctatccagcataacgtatactagagtaaaataccacaattttacaaacaaagcatacc |
4308049 |
T |
|
| Q |
201 |
acatacaacaataacaagcaattaa |
225 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
4308048 |
acatacaacaataaaaagcaattaa |
4308024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University