View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9981_low_32 (Length: 227)
Name: NF9981_low_32
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38454649 - 38454422
Alignment:
| Q |
1 |
gcaaaccactttaccctgtactgtagtttgttttctgtgttggtagaaagtagcaacgttatgtaccnnnnnnnn-gtagaaacgttgctattatttatt |
99 |
Q |
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|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
38454649 |
gcaaaccactttactctgtactgtagtttcttttctctgttggtagaaagtagcaacgttatgtaccaaaaaaaaagtagcaacgttgctattatttatt |
38454550 |
T |
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| Q |
100 |
tattttaattaatgctcttctgtgttggtagaggcatcatacgatggtttatattgattttggtttttattaattatctgcatatgtttcccatacttct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38454549 |
tattttaattaatgctcttctgtgttggtagaggcatcatacgatggtttatattgattttggtttttattaattatctgcatatgtttcccatacttct |
38454450 |
T |
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| Q |
200 |
ctcttcccttgcttgttagaacttagaa |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38454449 |
ctcttcccttgcttgttagaacttagaa |
38454422 |
T |
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