View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9981_low_5 (Length: 378)
Name: NF9981_low_5
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 42461696 - 42461341
Alignment:
| Q |
6 |
agaagcataggccatagaagcttcaagaaatttttgttcatccgaacctacacaacagtaattcaacaaagacatacaaaaatatagacttacatattaa |
105 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42461696 |
agaaacataagccatagaagcttcaagaaatttttgttcatccgaacctacacaacagtaattcaacaaagacttacaaaaatatagacttacatattaa |
42461597 |
T |
|
| Q |
106 |
caccaatccattattcatatatataagagtaataacagagaaaattacaccatacttagcatgacaacactgcttccttcccacataagttcctccttga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42461596 |
caccaatccattattcatatatataagagtaataacagagaaaattacaccatacttagcatgacaacactgcttccttcccacataagttcctccttga |
42461497 |
T |
|
| Q |
206 |
gattatcaaattcttcatttgacataatagcctttccctcataatagaatgactgttaaataaaacaaaaaaccaaacacaaattttagtccacatatcc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42461496 |
gattatcaaattcttcatttgacataatagcctttccctcataatagaatgactgttaaataaaacaaaaaaccaaccacaaattttagtccacatatcc |
42461397 |
T |
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| Q |
306 |
aaaagctgtgttgaacagtataaacggtcataagcacttatgagactgtttgggag |
361 |
Q |
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| T |
42461396 |
aaaagctgtgttgaacagtatcaacggtcataagcacttatgagactgtttgggag |
42461341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 3188737 - 3188829
Alignment:
| Q |
156 |
catacttagcatgacaacactgcttccttcccacataagttcctccttgagattatcaaattcttcatttgacataatagcctttccctcata |
248 |
Q |
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|||||||||||| ||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
3188737 |
catacttagcattacaacgctgcttccttcccacatgagttcttctttgagattatcaaattcttcatttgacatagttgcttttccctcata |
3188829 |
T |
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