View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9981_low_7 (Length: 339)
Name: NF9981_low_7
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28157341 - 28157216
Alignment:
| Q |
1 |
atttgaaggatttgtgggtagatgtttgagaggtttaggttcgatgaagtgattttggtagaagttgtgttttgggtgcagaaaagaggagagggaatga |
100 |
Q |
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| T |
28157341 |
atttgaaggatatgtgggtagatgtttgagaggtttaggttcgatgaagtgattttggtagaagttgtgttttgggtgcagaaaagaggagagggaatga |
28157242 |
T |
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| Q |
101 |
acaattacttcagcgccaaacgcaaa |
126 |
Q |
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| T |
28157241 |
acaattacttcagcgccaaacgcaaa |
28157216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 28157166 - 28157080
Alignment:
| Q |
188 |
gtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactc |
274 |
Q |
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| T |
28157166 |
gtatgtgcaaagataaccctttcccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactc |
28157080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 4840556 - 4840681
Alignment:
| Q |
1 |
atttgaaggatttgtgggtagatgtttgagaggtttaggttcgatgaagtgattttggtagaagttgtgttttgggtgcagaaaagaggagagggaatga |
100 |
Q |
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| T |
4840556 |
atttgaaggatctgtgggtagatgtttgagaggtttaggttcgatgaagtgattttggtagaagttgtgttttgggtgcagaaaagaggagagggaatga |
4840655 |
T |
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| Q |
101 |
acaattacttcagcgccaaacgcaaa |
126 |
Q |
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| T |
4840656 |
acaattacttcagcgccagacgcaaa |
4840681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 4840729 - 4840843
Alignment:
| Q |
175 |
aatttggtatgctgtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactc |
274 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4840729 |
aatttggtatgccgtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactc |
4840828 |
T |
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| Q |
275 |
ttatcatcacacacc |
289 |
Q |
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| T |
4840829 |
ttatcatcacacacc |
4840843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 14360968 - 14361093
Alignment:
| Q |
1 |
atttgaaggatttgtgggtagatgtttgagaggtttaggttcgatgaagtgattttggtagaagttgtgttttgggtgcagaaaagaggagagggaatga |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14360968 |
atttgaaggatttgtgggtagatgtttgagagggttaggttcgatgaagtgattttggtagaagttgtgttttgggtgcagaaaagaggagagggaatga |
14361067 |
T |
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| Q |
101 |
acaattacttcagcgccaaacgcaaa |
126 |
Q |
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| T |
14361068 |
aaaattacttcaacgccaaacgcaaa |
14361093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 13069804 - 13069933
Alignment:
| Q |
1 |
atttgaaggatttgtgggtagatgtttgagaggtttaggttcgatgaagtgattttggtagaagttgtgttttgggtgcagaaaagaggagagggaatga |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13069804 |
atttgaaggatctgtgggtagatgtttgagaggtttaggttcgatgaagtgattttggtagaagttgtgctttgggtgcagaaaagaggagagggaatga |
13069903 |
T |
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| Q |
101 |
acaa----ttacttcagcgccaaacgcaaa |
126 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
13069904 |
acaattacttacttcagcgccaaacgcaaa |
13069933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 14361134 - 14361232
Alignment:
| Q |
188 |
gtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactcttatcatcacac |
286 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
14361134 |
gtatgtgcaaagatagcccttccccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctatcacactcctatcatcacac |
14361232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 13069979 - 13070077
Alignment:
| Q |
188 |
gtatgtgcaaagatagcccttccccattaaacgctaacaaatcatttacaccaatattagcgttcaccagaaaacgctatcacactcttatcatcacac |
286 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||||| |
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| T |
13069979 |
gtatgtgcaaagatagcccttccccataaaacgctaacaaatcatttacaccaatattagcgttcactagaaaacgctattacacccctatcatcacac |
13070077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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