View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9981_low_8 (Length: 338)
Name: NF9981_low_8
Description: NF9981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9981_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 55271781 - 55271463
Alignment:
| Q |
1 |
cttatttatggtttggttataggaatgtgtttgtgttttcttgccttaattacttttgcttgtgttgcagatggctgagattgatttggaatggccaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55271781 |
cttatttatggtttggttataggaatgtgtttgtgttttattgccttaattacttttgcttgtgttgcagatggctgagattgatttggaatggccaaag |
55271682 |
T |
|
| Q |
101 |
aaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcaccattaagtatgtttaacttttgttagattattgattgcatgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55271681 |
aaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcaccattaagtatgtttaacttttgttagattattgattgcatgctt |
55271582 |
T |
|
| Q |
201 |
aaaatacatatataccatcatcatattcatattcatgtcttggatatggttctttcaggttttatactgaggctcttgggatgaaacttttgaggcagag |
300 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55271581 |
aaaatac----ataccatcatcatattcatattcatgtcttggatatggttctttcaggttttatactgaggctcttgggatgaaacttttgaggcagag |
55271486 |
T |
|
| Q |
301 |
agatgttcctgaggagaaatatg |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
55271485 |
agatgttcctgaggagaaatatg |
55271463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 55265902 - 55265558
Alignment:
| Q |
1 |
cttatttatggtttggttataggaatgtgtttgtgtt--------ttcttgccttaattacttttgcttgtgttgcagatggctgagattgatttggaat |
92 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55265902 |
cttatttatggtttggttatgtgaatgtgtttgtgttgcactgttttattgccttaattgattttgcttgtgttgcagatggctgagattgatttggaat |
55265803 |
T |
|
| Q |
93 |
ggccaaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcaccattaagtatgtttaacttttgttagattattgatt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55265802 |
ggccaaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcaccattaagtatgtttaacttttgttagattattgatt |
55265703 |
T |
|
| Q |
193 |
gcatgcttaaaatacata-------tata-------ccatcatcatattcatattcatgtcttggatatggttctttcaggttttatactgaggctcttg |
278 |
Q |
| |
|
|||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55265702 |
gcatgcttaaaatacaaaccatcatcataatcatattcatattcatattcatattcatgtcttggatatggttctttcaggttttatactgaggctcttg |
55265603 |
T |
|
| Q |
279 |
ggatgaaacttttgaggcagagagatgttcctgaggagaaatatg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55265602 |
ggatgaaacttttgaggcagagagatgttcctgaggagaaatatg |
55265558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 8303053 - 8302987
Alignment:
| Q |
255 |
tcaggttttatactgaggctcttgggatgaaacttttgaggcagagagatgttcctgaggagaaata |
321 |
Q |
| |
|
|||||||||| ||||| ||| |||| ||||| ||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
8303053 |
tcaggttttacactgaagcttttggaatgaagcttttgaggaaaagagatgttccagaggagaaata |
8302987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 43369186 - 43369158
Alignment:
| Q |
117 |
tgcttcatgttgtttatcgtgttggtgac |
145 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43369186 |
tgcttcatgttgtttatcgtgttggtgac |
43369158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University