View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9982_high_1 (Length: 529)
Name: NF9982_high_1
Description: NF9982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9982_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 162 - 512
Target Start/End: Complemental strand, 11178758 - 11178405
Alignment:
| Q |
162 |
gggggattcttaatatgagtaattttttcactacatgcacatacattcctgttacatattttaaagaaacaaaaaatttatacctgagagtgcaactaga |
261 |
Q |
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| T |
11178758 |
gggggattcttaatatgagtcatttttagactatatgtacatacattcatgttacatattttgaagaaacaaaaaaattatacctgagagtgcaactaga |
11178659 |
T |
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| Q |
262 |
tcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaagtgggggcaggaagattttgagctgcaagggaattatttgctg |
361 |
Q |
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| T |
11178658 |
tcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaagtgggggcaggaagattttgagctgcaagggaattatttgctg |
11178559 |
T |
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| Q |
362 |
ttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaatttttgttgcattgtaggataataaagaaaatatatagcatggtt |
461 |
Q |
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| T |
11178558 |
ttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaatttttgttgcattgtaggataataaagaaaatatatatcatggtt |
11178459 |
T |
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| Q |
462 |
tatgatgttaattaataaaattgaaattctat---gaacgtacactgtcacata |
512 |
Q |
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| T |
11178458 |
tatgatgttaattaataaaattgaaattctatgaagaacgtacattgtcacata |
11178405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 11178855 - 11178765
Alignment:
| Q |
19 |
gaatcgggatttccagtgttgctgaaattgtataatcgatcaacgaaaaatctgcattgacctcttccgattgtatggccacctaaaaaat |
109 |
Q |
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| T |
11178855 |
gaatcgggatttccagtgttgctgaaattgtataatcgatcaacgaaaaatctgcattgacctcttccaattgtatgaccacctaaaaaat |
11178765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 11172751 - 11172665
Alignment:
| Q |
21 |
atcgggatttccagtgttgctgaaattgtataatcgatcaacgaaaaatctgcattgacctcttccgattgtatggccacctaaaaa |
107 |
Q |
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| T |
11172751 |
atcgggatttccagtattgctgaaattgtataatcgatcaacgaagaatctgcattgacctctaccgattgtatgagcacctaaaaa |
11172665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 240 - 416
Target Start/End: Complemental strand, 11172528 - 11172352
Alignment:
| Q |
240 |
tatacctgagagtgcaactagatcagtagtagtgaggttttgattatcaaagctagattttagttgagtaaggttgaaagtgggggcaggaagattttga |
339 |
Q |
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| T |
11172528 |
tatacctgaaagtgcaactagatctgtagcgtcgagaccttgattatcaaagttagatttcagttgagtaaggttgaaagctggacttggaagatttata |
11172429 |
T |
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| Q |
340 |
gctgcaagggaattatttgctgttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaa |
416 |
Q |
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| T |
11172428 |
ttagcaagggttagatttgctgttaaactatctcttcttcctaatggcactttccaatcaggaccattagcctgcaa |
11172352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 11110534 - 11110473
Alignment:
| Q |
328 |
ggaagattttgagctgcaagggaattatttgctgttaaactatcccttcttcctaatggaac |
389 |
Q |
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| T |
11110534 |
ggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaac |
11110473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 11097426 - 11097386
Alignment:
| Q |
355 |
tttgctgttaaactatcccttcttcctaatggaacttgcca |
395 |
Q |
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| T |
11097426 |
tttgctgttaaactatcccttcttcccaatggaatttgcca |
11097386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 11118469 - 11118423
Alignment:
| Q |
343 |
gcaagggaattatttgctgttaaactatcccttcttcctaatggaac |
389 |
Q |
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| T |
11118469 |
gcaagggattgatttgctgttagactatcccttcttcccaatggaac |
11118423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 11183800 - 11183861
Alignment:
| Q |
43 |
aaattgtataatcgatcaacgaaaaatctgcattgacctcttccgattgtatggccacctaa |
104 |
Q |
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| T |
11183800 |
aaatcgtataatcgatcaacgaagaatccacattgacctctaccaattgtatgagcacctaa |
11183861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 11137279 - 11137227
Alignment:
| Q |
361 |
gttaaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctg |
413 |
Q |
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| T |
11137279 |
gttaaaccatcccttcttcctaagggaaccttccaattaggaccatctgcctg |
11137227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 11184243 - 11184295
Alignment:
| Q |
364 |
aaactatcccttcttcctaatggaacttgccaagtaggaccatttgcctgcaa |
416 |
Q |
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| T |
11184243 |
aaactatctcttcttcctaatggaacttcccaatcaggaccatgagcctgcaa |
11184295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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