View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9982_high_2 (Length: 377)
Name: NF9982_high_2
Description: NF9982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9982_high_2 |
 | |
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| [»] scaffold0209 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 4376874 - 4377230
Alignment:
| Q |
1 |
agccaaaattttagtcaattgggctgccaatatgtaacaagnnnnnnnnnnnnntttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaa |
100 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4376874 |
agccaaaattttagtcaattgagctgccaatatgtaacaagaaaaaaata----tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaa |
4376969 |
T |
|
| Q |
101 |
tccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaatacaaagtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4376970 |
tccctggcctatatgtaatcctattcacgttaaatgtaagcactcaaacacagagtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtg |
4377069 |
T |
|
| Q |
201 |
ctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcgaccaaattaaatgcatcatgctagtatttgattctaaagtaaatgaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4377070 |
ctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcgaccaaattaaatgcatcatgctagtatttgattctaaattaaatgaa |
4377169 |
T |
|
| Q |
301 |
attggcaatgtcgcaactacaatctctacctcaactatgtttgattccactactccagatt |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
4377170 |
attggcaatgtcgcaactacaatctctacctcaattatgtttgattccactacttcagatt |
4377230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 30654654 - 30654589
Alignment:
| Q |
55 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatc |
120 |
Q |
| |
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||||||||||| | ||||||| ||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
30654654 |
tttgtccaaaggtttgacatcgagtagtgttaggcaacaaaactaatccctgatctatatgtaatc |
30654589 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 19933864 - 19933828
Alignment:
| Q |
131 |
taaatgtaagcactcaaatacaaagtcaacactaaaa |
167 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||| |
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|
| T |
19933864 |
taaatgtaagcactcaaacacaaagccaacactaaaa |
19933828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 55 - 362
Target Start/End: Original strand, 8834476 - 8834783
Alignment:
| Q |
55 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaatacaaa |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
8834476 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaattaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaacacaga |
8834575 |
T |
|
| Q |
155 |
gtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtcaaccaaatatatatcga |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| |
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|
| T |
8834576 |
gtcaacactaaaatcaaatgctactgaaagacttcaaagatatgcgctattttaatccatttaacaaaaatgcagccactctcaacctaatatatatcga |
8834675 |
T |
|
| Q |
255 |
ccaaattaaatgcatcatgctagtatttgattctaaagtaaatgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactact |
354 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
8834676 |
ccaaattaaatgcaacatgctagtatttgattccaaattaaatgaaattggcaatgtcgcaactacaatctctacctaaactatgtttgattccactact |
8834775 |
T |
|
| Q |
355 |
ccagattg |
362 |
Q |
| |
|
||||||| |
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|
| T |
8834776 |
tcagattg |
8834783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 15437538 - 15437620
Alignment:
| Q |
154 |
agtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
15437538 |
agtcaacactaaaatcaaatgctactgaaagatttcaaag-tatgtgctattttaatccatttaacagaaatgcagccactgtc |
15437620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 15528842 - 15528924
Alignment:
| Q |
154 |
agtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
15528842 |
agtcaacactaaaatcaaatgctactgaaagatttcaaag-tatgtgctattttaatccatttaacagaaatgcagccactgtc |
15528924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 29387145 - 29387202
Alignment:
| Q |
296 |
atgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactac |
353 |
Q |
| |
|
||||||| ||||||||| |||||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
29387145 |
atgaaataggcaatgtctcaactaaaacctctgcctcaactatgtttgattccactac |
29387202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 141; Significance: 8e-74; HSPs: 4)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 55 - 282
Target Start/End: Complemental strand, 7306 - 7078
Alignment:
| Q |
55 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaatacaaa |
154 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||| || ||||||| ||||||||||||| |||||||| |||||||||||||||||| ||| | |
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|
| T |
7306 |
tttgtccaaagctgtgacatctaatagtgttatgcaacaacactaatccctaacctatatgtaatcttattcatgctaaatgtaagcactcaaacacaga |
7207 |
T |
|
| Q |
155 |
gtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaac-ataaatgcagccactgtcaaccaaatatatatcg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||| | |||||||||| |
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|
| T |
7206 |
gtcaacactaaaatcaaatgctactgaaagatttcaaagatatgttctattttaatccatttaacaaaaaatgcagccagtgtctaggtaatatatatca |
7107 |
T |
|
| Q |
254 |
accaaattaaatgcatcatgctagtattt |
282 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
7106 |
accaaattaaatgcaacatgctagtattt |
7078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 55 - 282
Target Start/End: Complemental strand, 20760 - 20532
Alignment:
| Q |
55 |
tttgtccaaagctatgacatctagtagtgttaggcaacaaaaccaatccctggcctatatgtaatcctattcatgttaaatgtaagcactcaaatacaaa |
154 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||| || ||||||| ||||||||||||| |||||||| |||||||||||||||||| ||| | |
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|
| T |
20760 |
tttgtccaaagctgtgacatctaatagtgttatgcaacaacactaatccctaacctatatgtaatcttattcatgctaaatgtaagcactcaaacacaga |
20661 |
T |
|
| Q |
155 |
gtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaac-ataaatgcagccactgtcaaccaaatatatatcg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||| | |||||||||| |
|
|
| T |
20660 |
gtcaacactaaaatcaaatgctactgaaagatttcaaagatatgttctattttaatccatttaacaaaaaatgcagccagtgtctaggtaatatatatca |
20561 |
T |
|
| Q |
254 |
accaaattaaatgcatcatgctagtattt |
282 |
Q |
| |
|
||||||||||||||| ||||||||||||| |
|
|
| T |
20560 |
accaaattaaatgcaacatgctagtattt |
20532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 7025 - 6968
Alignment:
| Q |
296 |
atgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactac |
353 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7025 |
atgaaattggcaatgtcgcaactacaacctctacctcaactatgtttgattccactac |
6968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 20479 - 20422
Alignment:
| Q |
296 |
atgaaattggcaatgtcgcaactacaatctctacctcaactatgtttgattccactac |
353 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20479 |
atgaaattggcaatgtcgcaactacaacctctacctcaactatgtttgattccactac |
20422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 30936309 - 30936226
Alignment:
| Q |
154 |
agtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30936309 |
agtcaacactaaaatcaaatgctactgaaagacttcaaagatatgttctattttaatccatttaatataaatgcagccactgtc |
30936226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 154 - 237
Target Start/End: Original strand, 22589347 - 22589430
Alignment:
| Q |
154 |
agtcaacactaaaatcaaatgctactgaaagatttcaaagatatgtgctattttaatccatttaacataaatgcagccactgtc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22589347 |
agtcaacactaaaatcaaatgctactgaaagacttcaaagatatgttctatttgaatccatttaacataaatgcagccactgtc |
22589430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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