View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9982_high_5 (Length: 281)
Name: NF9982_high_5
Description: NF9982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9982_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 27065899 - 27066153
Alignment:
| Q |
17 |
aatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactac |
116 |
Q |
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| T |
27065899 |
aatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactac |
27065998 |
T |
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| Q |
117 |
cactatcactaagagagttagttgaagcagtagttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattattattcccatt |
216 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065999 |
cactatcactgagagagttagttgaagtagtagttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattattattcccatt |
27066098 |
T |
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| Q |
217 |
gtaaactttaaacgaaaccttatgatctaaatcagcacctttagcatagcctttg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066099 |
gtaaactttaaacgaaaccttatgatctaaatcagcacctttagcatagcctttg |
27066153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 27079616 - 27079810
Alignment:
| Q |
17 |
aatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactac |
116 |
Q |
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||||||||| | ||||| |||||||||||||| ||||| |||||||| || || |||||||||||||||||||||||| ||||||||||||||| |
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| T |
27079616 |
aatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacccatttttttgccaaactaa |
27079715 |
T |
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| Q |
117 |
cactatcactaagagagttagttgaagcagtag---ttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtattatta |
208 |
Q |
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| T |
27079716 |
cactttcactaacagaatttgttgaagaagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaatccttaaacgtgttatta |
27079810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 27053460 - 27053538
Alignment:
| Q |
20 |
ttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
98 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||| | || |||||||||||||| |||| ||||| |
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| T |
27053460 |
ttatcccttgtatctggcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggttcaacca |
27053538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 14866139 - 14866036
Alignment:
| Q |
17 |
aatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttgccaaactac |
116 |
Q |
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|||||||| || ||||| ||||||||||| || || ||||| |||||||||||||| | |||||||||||||| | |||| |||||| ||||||||| |
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| T |
14866139 |
aatttatctctaatatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaacccatttttttaccaaactac |
14866040 |
T |
|
| Q |
117 |
cact |
120 |
Q |
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|||| |
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| T |
14866039 |
cact |
14866036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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