View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9982_low_1 (Length: 559)
Name: NF9982_low_1
Description: NF9982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9982_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 22 - 540
Target Start/End: Original strand, 30464002 - 30464533
Alignment:
| Q |
22 |
ctccgttagcgctaacggcgaggaatcagagatgaattcatcggcgtcattggagaacaacgacagcaaagtagaagagaagaattcaaagaaagattat |
121 |
Q |
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| T |
30464002 |
ctccgttagcgctaacggcgaggaatcagagatgaattcgtcggcgtcattggagaacaac---agcaaagtagaagagaagaattcaaagaaagattat |
30464098 |
T |
|
| Q |
122 |
gaggataaaacaagttgttcgggtcaaggctcggaagagatagcgagtaaaagagatgaatctgtggttgtgaatccattgttaaaag------------ |
209 |
Q |
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| T |
30464099 |
gaggataaaacaagttgttcgggtcaaggctcggaagagatagcgagtaaaagagatgaatctgtggttgtgaatccattgttaaaagatgcaggtggaa |
30464198 |
T |
|
| Q |
210 |
---gaaggaaatcatcgagtaaatctaagaatcctcaagggaagagaaaagtcaaggtatacttaaataaggaaactatagagttttattcttgctaagt |
306 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30464199 |
aaggaaggaaatcatcgagtaaatctaagtatcctcaagggaagagaaaagtcaaggtatacttaaataaggaaactatagagttttattcttgctaagt |
30464298 |
T |
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| Q |
307 |
ggttt-atctaaatttggtaattaaattcagtgtaactggagttcatcatgtgtagtactaactttttagctaaggttctgtcactgtctttttgttacc |
405 |
Q |
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||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30464299 |
ggttttatctaaatttggtaattaaattcagtgtagctagagttcatcatgtgtagtactaactttttagctaaggttctctcactgtctttttgttacc |
30464398 |
T |
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| Q |
406 |
actctttacaaagagtctcagtttgtctaaagagctcacgggtaccctaacggtagatacacaataaaaaataatagaagattgcaatttttcaaaattt |
505 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30464399 |
actcttgacaaagagtctcagtttgtctaaagagctcacgggtaccctaacggtagatacacaataaaaaataatagaagattgcaatttttcaaaattt |
30464498 |
T |
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| Q |
506 |
tgctggtaattcgtagtaagtgtatgtttggtatt |
540 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30464499 |
tgctggtaattcgtagtaagtgtatgtttggtatt |
30464533 |
T |
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