View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9982_low_5 (Length: 351)
Name: NF9982_low_5
Description: NF9982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9982_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 16480544 - 16480221
Alignment:
| Q |
18 |
ccaattacctcagtacatattgcaacaactgcaatatttgctatcgcaacgactgcaactgcaatttacaaataattgaactatacttgttatttgatac |
117 |
Q |
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| T |
16480544 |
ccaatgacctcagtacatattgcaacaactgcaatatttgctatcgcaacgactgcaactgcaatttacaaataattgaactatacttgttatttgatac |
16480445 |
T |
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| Q |
118 |
ttgatctaattctaaggttttgaaattttatgtaggaaataataattcaaacaatcttgctttaagtaacattggtgggactactggttgggaacttgct |
217 |
Q |
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| T |
16480444 |
ttgatctaattataaggttttgaaattttatgtaggaaataataattcaaacaatcttgctttaagtaacattggtgggactactggttgggaacttgct |
16480345 |
T |
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| Q |
218 |
ttggttacaacaccaagtaaccacacgagtcaagcgccagatcgcgcaatggtttgtcactttgctatacaaatttcaattacttatcaagaaaaataac |
317 |
Q |
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| T |
16480344 |
ttggttacaacaccaagtaaccacacgagtcaagcgccagatcgcgcaatggtttgtcactttgctacacaaatttcaattacttatcaagaaaaataac |
16480245 |
T |
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| Q |
318 |
atttatattttcttaaaccctttg |
341 |
Q |
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| T |
16480244 |
atttatattttcttaaaccctttg |
16480221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 52901223 - 52901370
Alignment:
| Q |
110 |
tttgatacttgatctaattctaaggttttgaaattttatgtaggaaataataattcaaacaatcttgctttaagtaacattggtgggactactggttggg |
209 |
Q |
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| T |
52901223 |
tttgatacttgatccaattctaagattttcctactttatgtaggaaacaat---tcaaacaatcttgctttgactaatataactggaactactggttggg |
52901319 |
T |
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| Q |
210 |
aacttgctttggttacaacaccaagtaaccacacgagtcaagcgccagatc |
260 |
Q |
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| T |
52901320 |
aacttgcacttgttaccacgccaagcaaccacacctgccaagcgtcagatc |
52901370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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