View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9982_low_7 (Length: 231)
Name: NF9982_low_7
Description: NF9982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9982_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 52801791 - 52801652
Alignment:
| Q |
75 |
ttctcccaacaacaaagcaaatcgagtccagacaacccaaccaccacactaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatcc |
174 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52801791 |
ttctcccaacaacaaagcaaatcgagtcaagacaacccaaccaccacaccaccgccggccagccgccgcgaccactcacatgtcaccttcttctccatcc |
52801692 |
T |
|
| Q |
175 |
atcacccgccgacgcatcctcctgacctcctccatcttct |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52801691 |
atcacccgccggcgcatcctcctgacctcctccatcttct |
52801652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 34213098 - 34213059
Alignment:
| Q |
112 |
caaccaccacactaccgccggccagccgccgcgaccactc |
151 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
34213098 |
caaccaccacaccaccgccggtcagccgccgcgaccactc |
34213059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 12003174 - 12003135
Alignment:
| Q |
112 |
caaccaccacactaccgccggccagccgccgcgaccactc |
151 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
12003174 |
caaccaccacaccaccgccggtcagccgccgcgaccactc |
12003135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 14654782 - 14654743
Alignment:
| Q |
112 |
caaccaccacactaccgccggccagccgccgcgaccactc |
151 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
14654782 |
caaccaccacaccaccgccggtcagccgccgcgaccactc |
14654743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 33754221 - 33754132
Alignment:
| Q |
62 |
acgcgctctcatcttctcccaac-aacaaagcaaatcgagtccagacaacccaaccaccacactaccgccggccagccgccgcgaccactcac |
153 |
Q |
| |
|
||||| |||| |||||||||||| |||||||| |||||| |||| ||| |||||||||||| ||||| ||||||| ||| ||||||||||| |
|
|
| T |
33754221 |
acgcgttctcttcttctcccaaccaacaaagccaatcga-tcca--caaggcaaccaccacaccaccgctggccagctgccacgaccactcac |
33754132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University