View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_high_1 (Length: 629)
Name: NF9983_high_1
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 172 - 611
Target Start/End: Complemental strand, 40585481 - 40585044
Alignment:
| Q |
172 |
cataattcatgctttgtatgttacctgaatcttcaatttgtgatatttaccgcatttattagtcaactgaacatgaatcagctaaattacaagcattgat |
271 |
Q |
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| T |
40585481 |
cataattcatgctttgtgtgtttcctgaatcttcaatttgtgatatttaccacattt-ttagtcaactgaacatgaatcagctgaattacaagcattgat |
40585383 |
T |
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| Q |
272 |
gtattaacaggcacagaaatggctcagttagtttgtggaggatgccatactttactcatgtacatccgcggagcgacgagtgttcaatgctcttgttgtc |
371 |
Q |
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| T |
40585382 |
gtattcacaggcacagaaatggctcagttagtttgtggaggatgccatactttactcatgtacatccgcggagcaacaagtgttcaatgctcttgttgtc |
40585283 |
T |
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| Q |
372 |
acacagtcaatttagctctagaaggtattgannnnnnnngttaataatctgatgagctttgttaaattgttgagtaaatttgcataatgacagcttcaaa |
471 |
Q |
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| T |
40585282 |
acacagtcaatctagctctggaaggtattga-tttttttgttaataatctcatgagctttgttaaattgttgagtaaatttgcataatgacagcttcaaa |
40585184 |
T |
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| Q |
472 |
aacatgtttcnnnnnnnagttaaattgttgtgattcggagtccgtactttatagttttaagaatgaaatgtgaattgtgacagcaaatcaggtggcacat |
571 |
Q |
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| T |
40585183 |
aacatgtttctttttggatttaaattgttgtgattcggagtccgttacttgtagttttaagaatgaaatgtgtattgtgacagcaaatcaggtggcacat |
40585084 |
T |
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| Q |
572 |
gtaaactgtggtaactgcaggatgctacttatgtatcaat |
611 |
Q |
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| T |
40585083 |
gtaaactgtggtaactgcaggatgctacttatgtatcaat |
40585044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 40585618 - 40585487
Alignment:
| Q |
10 |
gcacagagtcaacttgtgtgttctggttgtagaaaccttcttatgtatccagttggagccacttctgtatgctgtgctgtttgcaatgctgtcacagcag |
109 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40585618 |
gcacagagtcaacttgtgtgttctggctgtagaaaccttcttatgtatccagttggagcaacttctgtatgctgtgctgtttgcaatgctgtcacagcag |
40585519 |
T |
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| Q |
110 |
ttccacctcctggtatgatgcaatattcttcc |
141 |
Q |
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| T |
40585518 |
tgccacctcctggtatgatgcaatattcttcc |
40585487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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