View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_high_10 (Length: 249)
Name: NF9983_high_10
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 2316504 - 2316657
Alignment:
| Q |
91 |
tttttatttgtgcagaatggatgcttgagtcaagaagtggtgaaaactaatatgatgttaattgtgctgtgtatatgcatgcatacaatctctcatacgg |
190 |
Q |
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| T |
2316504 |
tttttatttgtgcagaatggatgcttgagtcaagaagtggtgaaaactaatatgatgttaattgtgctgtgtatatgcatgcatacaatctctcatacgg |
2316603 |
T |
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| Q |
191 |
agtggaatttgaaaccacttcaaaaatatatcatggttttgtatctctgcttct |
244 |
Q |
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| T |
2316604 |
agtggaatttgaaaccacttcaaaaatatatcatggttttgtatttctgtttct |
2316657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 2289379 - 2289537
Alignment:
| Q |
91 |
tttttatttgtgcagaatggatgcttgagtcaagaagtggtgaaaactaatatgatgttaattgtgctgtgtat----atgcatgcatacaatctctcat |
186 |
Q |
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| T |
2289379 |
ttttaatttgtgcagaatggatgcttgagtcaagaagtggtgaaaactaatatgatgttaattgtgctgtgtatatgcatgcatgcatacaatctctcat |
2289478 |
T |
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| Q |
187 |
acggagtgg-aatttgaaaccacttcaaaaatatatcatggttttgtatctctgcttct |
244 |
Q |
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| T |
2289479 |
acggagtggaaatttgaaaccacttcaaaaatatatcatggttttgtatttctgtttct |
2289537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2316385 - 2316473
Alignment:
| Q |
1 |
aagaacttttaagcaacctgttaaaccgttgaataggtaaagagataaagtaatttgatgaggtggttaatttttattggcatgtgtta |
89 |
Q |
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| T |
2316385 |
aagaatttttaaacaacgtgttagaccgttgaataggtaaagagataaagtaagttgatgaggtggttaatttttattggcatgtgtta |
2316473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2288339 - 2288427
Alignment:
| Q |
1 |
aagaacttttaagcaacctgttaaaccgttgaataggtaaagagataaagtaatttgatgaggtggttaatttttattggcatgtgtta |
89 |
Q |
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| T |
2288339 |
aagaaattttaagcaacctattaaaccgatgaataggtaaagaaataaagtgattggatgaggtggttaatttttattggcgtgtgtta |
2288427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 18548418 - 18548486
Alignment:
| Q |
12 |
agcaacctgttaaaccgttgaataggtaaagagataaagtaatttgatgaggtggttaatttttattgg |
80 |
Q |
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| T |
18548418 |
agcaacctgttaaaccggtgaataggtaaaggaataaagtaattggatgaggtggctaatttttattgg |
18548486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 37628374 - 37628452
Alignment:
| Q |
12 |
agcaacctgttaaaccgttgaataggtaaagagataaagtaatttgatgaggtggttaatttttattggcatgtgttaa |
90 |
Q |
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| T |
37628374 |
agcaacctgttaaaccggtgaataggtaaagaaataaagtaattggatgaggtgtctaattttgattggtgtgtgttaa |
37628452 |
T |
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