View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_high_12 (Length: 240)
Name: NF9983_high_12
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 2316372 - 2316174
Alignment:
| Q |
25 |
atagaatttaattgcaatctcatcgtctttcaatatgtggatcgcatcttctcatttcaattagtacacatctttctctcatggttcaatctgccgcatc |
124 |
Q |
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| T |
2316372 |
atagaatttaattgcaatctcatcgtctttcaatatgtggatcgcatcttctcatttcaattagtacacatctttctctcatggttcaatctgccgcatc |
2316273 |
T |
|
| Q |
125 |
tcgtctctattaactaactgccaacgtatcgtcattgttgaaagctccgatggttgtcgttgacttggccgttgatgaaattttccagatctatgttct |
223 |
Q |
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| T |
2316272 |
tcgtctctattaactaactgccaacgtatcgtcattgttgaaagctccggtggccgtcgttgacttggccgttgatgaaattttccagatctatgttct |
2316174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 2288326 - 2288131
Alignment:
| Q |
25 |
atagaatttaattgcaatctcatcgtctttcaatatgtggatcgcatcttctcatttcaattagtacacatctttctctcatggttcaatctgccgcatc |
124 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
2288326 |
atagaatttaattgcaatctcatcgtctttca---tgtggatcgcatcttctcatttcaattaggacacatctttctctcatggttcaatgtgccgcatc |
2288230 |
T |
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| Q |
125 |
tcgtctctattaactaactgccaacgtatcgtcattgttgaaagctccgatggttgtcgttgacttggccgttgatgaaattttccagatctatgttct |
223 |
Q |
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| T |
2288229 |
tcgtctctattaactaactgccaacgtatcgtcattgttgaaagctccggtggccatcgttgacttggccgttgatgaaattttccagatctatgttct |
2288131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 18548230 - 18548093
Alignment:
| Q |
93 |
catctttctctcatggttcaatctgccgcatctcgtctctattaactaactgccaacgtatcgtcattgttgaaagctccgatggttgtcgttgactt-- |
190 |
Q |
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| T |
18548230 |
catctttctctcaaggttcaatctgccacatctcgtctctgttaactaactgccaatgtatcgtcactgttgaaagctctggtggccgtcgttgacttgg |
18548131 |
T |
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| Q |
191 |
-----ggccgttgatgaaattttccagatctatgttct |
223 |
Q |
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|||||| ||||| |||||||||||||||||||| |
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| T |
18548130 |
tcggaggccgtcgatgagattttccagatctatgttct |
18548093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 18548348 - 18548301
Alignment:
| Q |
39 |
caatctcatcgtctttcaatatgtggatcgcatcttctcatttcaatt |
86 |
Q |
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| T |
18548348 |
caatctcatcgtctttcaatatgtggatggcatcttctcctttcaatt |
18548301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 37628216 - 37628119
Alignment:
| Q |
95 |
tctttctctcatggttcaatctgccgcatctcgtctctattaactaactgccaacgtatcgtcattgttgaaagctccgatggttgtcgttgacttgg |
192 |
Q |
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| T |
37628216 |
tctttctctcaagattctatctgccacatctcgtctctgttaactaactgccagcgtttcgtcaccgttgaaagctctggtggccgtcgttgacttgg |
37628119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 37628316 - 37628273
Alignment:
| Q |
39 |
caatctcatcgtctttcaatatgtggatcgcatcttctcatttc |
82 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
37628316 |
caatctcatcgtatttcaatatgtggatggcatcttctcatttc |
37628273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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