View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_high_7 (Length: 300)
Name: NF9983_high_7
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_high_7 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 3333159 - 3332860
Alignment:
| Q |
7 |
ccaatacctgcatagctctctccggctatgtaaaatgctcttgttctatatgatggatacttgagaaaccaattgtgcagaaatgtgtaagcatcattag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3333159 |
ccaatacctgcatagctctctccggctatgtaaaatgctcttgttctatatgatggatacttgagaaaccaattgtgcagaaatgtgtaagcatcattag |
3333060 |
T |
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| Q |
107 |
ctgtttcaaatagtcaagagaacacaattaaaattaactatagacttattttgt-----------atcatagtgnnnnnnncagatattatgaatttaga |
195 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||| |
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| T |
3333059 |
ctgtttcaaatagtcaagagaacacaattaaaaataactatagacttattttgtaacatttgatgatcatagtgaaaaaaacagatattatcaatttaga |
3332960 |
T |
|
| Q |
196 |
acctgcgaagtcatctcccagttgtgcatattcactggttgtatttgaataagaaaatccaactccaacaggagattccaagaataacatctctgcttct |
295 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
3332959 |
acctgcgaagtcatctcctagttgtgcatattcactggttgtatttgaataagaaaatccaactccaacaggagattccaagaataacatgtttgcttct |
3332860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3340750 - 3340644
Alignment:
| Q |
8 |
caatacctgcatagctctctccggctatgtaaaatgctcttgttctatatgatggatacttgagaaaccaattgtgcagaaatgtgtaagcatcattagc |
107 |
Q |
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|||||||| ||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||||| ||||| || || || || ||||||| ||||||||| |
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| T |
3340750 |
caatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatcattagc |
3340651 |
T |
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| Q |
108 |
tgtttca |
114 |
Q |
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||||||| |
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| T |
3340650 |
tgtttca |
3340644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 3340532 - 3340444
Alignment:
| Q |
196 |
acctgcgaagtcatctcccagttgtgcatattcactggttgtatttgaataagaaaatccaactccaacaggagattccaagaataaca |
284 |
Q |
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| T |
3340532 |
acctgtgaaatcatctcccaattgtttgtattcactggttgtatttgagtaggaaaatccaactccaacaggagattcaaggaataaca |
3340444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 26634204 - 26634170
Alignment:
| Q |
239 |
tttgaataagaaaatccaactccaacaggagattc |
273 |
Q |
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| T |
26634204 |
tttgaatatgaaaatccaactccaacaggagattc |
26634170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 34254099 - 34254067
Alignment:
| Q |
238 |
atttgaataagaaaatccaactccaacaggaga |
270 |
Q |
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| T |
34254099 |
atttgaatatgaaaatccaactccaacaggaga |
34254067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 35794421 - 35794522
Alignment:
| Q |
8 |
caatacctgcatagctctctccggctatgtaaaatgctcttgttctatatgatggatacttgagaaaccaattgtgcagaaatgtgtaagcatcattagc |
107 |
Q |
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|||||||||||||||| ||||| ||||||||||||| | | ||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||| || |
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| T |
35794421 |
caatacctgcatagctttctcctgctatgtaaaatgttttacttctatatgatgggaacttgaggaaccaattgtgtagaaaattgtaagcatcattggc |
35794520 |
T |
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| Q |
108 |
tg |
109 |
Q |
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|| |
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| T |
35794521 |
tg |
35794522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 35794644 - 35794733
Alignment:
| Q |
196 |
acctgcgaagtcatctcccagttgtgcatattcactggttgtatttgaataagaaaatccaactccaacaggagattccaagaataacat |
285 |
Q |
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||||| ||||||||| |||| |||| ||| |||||||||||||||||||| ||||| |||||||| ||||||||||| | ||||||||| |
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| T |
35794644 |
acctgtgaagtcatcacccaattgttgataatcactggttgtatttgaataggaaaagccaactccgacaggagattctaggaataacat |
35794733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 316300 - 316340
Alignment:
| Q |
239 |
tttgaataagaaaatccaactccaacaggagattccaagaa |
279 |
Q |
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| T |
316300 |
tttgaataagaaaatcctactccaacaggtgactccaagaa |
316340 |
T |
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