View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_11 (Length: 297)
Name: NF9983_low_11
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 107 - 292
Target Start/End: Original strand, 42667642 - 42667827
Alignment:
| Q |
107 |
aagtttaagtccaatccacgataacggttaacatgagtatcatcgctaaatcgccactgttcatctccggcgatccacaaagactcttgccgtagatccg |
206 |
Q |
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| T |
42667642 |
aagtttaagtccaatccacgataacggttaacatgagtatcatcgctaaatcgccactgttcatctccggcgatccacaaagactcttgccgtagatccg |
42667741 |
T |
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| Q |
207 |
ggtaggagttaaaactcctcaacctgttatatgaagttttatcttctgagtactcataccaaaaacgtggtgctgtctctgcttct |
292 |
Q |
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| T |
42667742 |
ggtaggagttaaaactcctcaacctgttatatgaagttctatcttctgagtactcataccaaaaacgtggtgctgtttctggttct |
42667827 |
T |
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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 42667536 - 42667614
Alignment:
| Q |
1 |
ttcagattgatgcgtttctgatccttgcttcttcttgttctttcctttcaaagacgtgtgtacttcaatgtccttgatg |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667536 |
ttcagattgatgcgtttctgatccttgcttcttcttgttctttcctttcaaagacgtgtgtacttcaatgtccttgatg |
42667614 |
T |
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