View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_12 (Length: 285)
Name: NF9983_low_12
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 10776043 - 10776148
Alignment:
| Q |
43 |
tatttttaacactcttattaatttcttatacaaatcgaaccctgnnnnnnnnnnt---gaaaatacaacatacaaaatccaacccccaattcatgaaatt |
139 |
Q |
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| T |
10776043 |
tatttttaacacttttattaatttcttatacaaatcgaaacctgcaaaaaaaaataatgaaaatacaatatacaaaatccaacccccaattcatgaaatt |
10776142 |
T |
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| Q |
140 |
ggattg |
145 |
Q |
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|||||| |
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| T |
10776143 |
ggattg |
10776148 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 10776500 - 10776548
Alignment:
| Q |
136 |
aattggattgaattcaacagaggacaaaacaaaacatggaggattcatg |
184 |
Q |
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| T |
10776500 |
aattggatttaattcaacggaggacaaaacaaaacatggaggattcatg |
10776548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 10523460 - 10523399
Alignment:
| Q |
7 |
ataaaaattgaaacttggtttgatttcaagattgat--tatttttaacactcttattaattt |
66 |
Q |
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| T |
10523460 |
ataaaaattgaaactaggtttgatttcaatattgattatatttataacacttttattaattt |
10523399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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