View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_13 (Length: 261)
Name: NF9983_low_13
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 25995822 - 25995646
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatccttaannnnnnncttctgagattcgtatcagttgtgcaaaagagaaggaggcagggagtaga |
100 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25995822 |
ccaattaaatagttagaggaccaaaaaggtaatttatccttaatttttttcttatgagatttgtatcagttgtgcaaaagagaaggaggcagggagtagt |
25995723 |
T |
|
| Q |
101 |
aatgtgttcatttattacattactatgtttagagaattcaagcatttaatacaataaggatacattgcaaaatttaa |
177 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25995722 |
aatgtgttcatttattacattactatgtttagagaattcaagcatttaatacaataaggatacattgcaaaatttaa |
25995646 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 25995460 - 25995389
Alignment:
| Q |
168 |
caaaatttaatgcaccaactagactgccataacataccgtgcaggattccaaatgcagtcatcaccaatcac |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25995460 |
caaaatttaatgcaccaactagactgccataacataccgtgcaggattccaaatgcagacatcaccaatcac |
25995389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45053101 - 45053141
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctt |
41 |
Q |
| |
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|||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
45053101 |
ccaattaaatagttagaggaccaaaaaagtaatttagcctt |
45053141 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1432169 - 1432129
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctt |
41 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
1432169 |
ccaattaaatagttagaggaccaaaaaagtaatttatcctt |
1432129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45277008 - 45277050
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatccttaa |
43 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||||| |
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|
| T |
45277008 |
ccaattaaatagttagaggaccaaaaagataatttagccttaa |
45277050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7949450 - 7949409
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctta |
42 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||| |
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|
| T |
7949450 |
ccaattaaatagttagaggaccaaaaagataatttaacctta |
7949409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7535245 - 7535285
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctt |
41 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
7535245 |
ccaattaaatagttagaggaccaaaaagataatttagcctt |
7535285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7438842 - 7438802
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctt |
41 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||| |
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|
| T |
7438842 |
ccaattaaatagttagaggaccaaaaagataatttagcctt |
7438802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31237784 - 31237744
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctt |
41 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| |
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|
| T |
31237784 |
ccaattaaatagttagaggaccaaaaaagtaatttaacctt |
31237744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31247154 - 31247114
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctt |
41 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
31247154 |
ccaattaaatagttagaggaccaaaaaagtaatttaacctt |
31247114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34517310 - 34517270
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctt |
41 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
34517310 |
ccaattaaatagttagaggaccaaaaaagtaatttagcctt |
34517270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2182981 - 2182941
Alignment:
| Q |
1 |
ccaattaaatagttagaggaccaacaaaataatttatcctt |
41 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| |
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|
| T |
2182981 |
ccaattaaatagttagaggaccaaaaaattaatttagcctt |
2182941 |
T |
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