View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_14 (Length: 256)
Name: NF9983_low_14
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 37959423 - 37959231
Alignment:
| Q |
49 |
atttctcaatccctgatcaaagcaattgaagaatcatccatttatgttgtcattttgtccaaacactatgcttcttcctcttggtgcttggatgaactca |
148 |
Q |
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| T |
37959423 |
atttctcaatccctgatcaaagcaattgaagaatcatccatttatgttgtcattttgtccaaacactatgcttcttcctcttggtgcttggatgaactca |
37959324 |
T |
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| Q |
149 |
caaagatactccaatgtaagaggagttatggaagggaagtgatacctatcttctatgaggtggatccgtcagatgttaggcatcagagaaata |
241 |
Q |
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| T |
37959323 |
caaagatactccaatgtaagaggagttatggaagggaagtgatacctatcttctatgaggtggatccgtcagatgttaggcatcagagaaata |
37959231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 66 - 237
Target Start/End: Original strand, 37927954 - 37928125
Alignment:
| Q |
66 |
caaagcaattgaagaatcatccatttatgttgtcattttgtccaaacactatgcttcttcctcttggtgcttggatgaactcacaaagatactccaatgt |
165 |
Q |
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| T |
37927954 |
caaagcaatagaagaatcaacaatttatgtggtcattttgtcagaaaagtatgcttcttccacatggtgcttggatgaattcacaaagatactggaatgt |
37928053 |
T |
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| Q |
166 |
aagaggagttatggaagggaagtgatacctatcttctatgaggtggatccgtcagatgttaggcatcagaga |
237 |
Q |
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| T |
37928054 |
aaggagagatatggaagggaagtgatacctgtcttctataaggtggatccgtcaactgttaggcatcagaga |
37928125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 25720420 - 25720555
Alignment:
| Q |
98 |
tcattttgtccaaacactatgcttcttcctcttggtgcttggatgaactcacaaagatactccaatgtaagaggagttatggaagggaagtgatacctat |
197 |
Q |
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| T |
25720420 |
tcattttatccgagcattatgcttcttccacatggtgtatggatgaactcacaaagatactcgagtgcaaacaaatatatggaagggatgtgataccggt |
25720519 |
T |
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| Q |
198 |
cttctatgaggtggatccgtcagatgttaggcatca |
233 |
Q |
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| T |
25720520 |
cttctacaaggtggatccatcaaatgttaggaatca |
25720555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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