View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_17 (Length: 246)
Name: NF9983_low_17
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 26317334 - 26317246
Alignment:
| Q |
3 |
acatagacattcatcgtgtttcaatatattgagcattaccacatttatcatctagagacatattgacacttagacaattaaaaactatg |
91 |
Q |
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| T |
26317334 |
acatagacattcatcatgtttcaatatattgagcattaccacatttatcatctagagacatattgacacttagacatttaagaactatg |
26317246 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 26317220 - 26317164
Alignment:
| Q |
172 |
attatcatatagaaacatacgaggatttaatcatgtggcgacaattataagcatatt |
228 |
Q |
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| T |
26317220 |
attatcatatagaaacatatgaggatttaatcatgtggcgacaattataagcatatt |
26317164 |
T |
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