View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_18 (Length: 241)
Name: NF9983_low_18
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9784268 - 9784490
Alignment:
| Q |
1 |
ttctttcctaaactatttaagtggaccactgatctagtcaagtataatacattcaaacttacaaagttcatttgtggacaaagcataatccatacagatt |
100 |
Q |
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| T |
9784268 |
ttctttcctaaactatttaagtcgaccactgatctagtcaagtataatacattcaaacttacaaagttcatttgtggacaaagcataatccatacagatt |
9784367 |
T |
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| Q |
101 |
attgagcataatctatagaccaaattactagcaacaagtcttgacattctaaaagaatttgtgggaagggagatattaaaagacaaagttattgtccaaa |
200 |
Q |
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| T |
9784368 |
attgagcataatctatagaccaaattgctagcaacaagtcttgacattctaaaagaatttgtgggaagggagatattaaaagacaaagttattgtccaaa |
9784467 |
T |
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| Q |
201 |
gagggatttttattaggcatggt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
9784468 |
gagggatttttattaggcatggt |
9784490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 30036169 - 30036223
Alignment:
| Q |
117 |
agaccaaattactagcaacaagtcttgacattctaaaagaatttgtgggaaggga |
171 |
Q |
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| T |
30036169 |
agaccaaattaccagcaacaagtctttgcattctaaaagaatttgtgggaaggga |
30036223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 30151905 - 30151959
Alignment:
| Q |
117 |
agaccaaattactagcaacaagtcttgacattctaaaagaatttgtgggaaggga |
171 |
Q |
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| T |
30151905 |
agaccaaattaccagcaacaagtctttgcattctaaaagaatttgtgggaaggga |
30151959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 30144087 - 30144130
Alignment:
| Q |
178 |
aaaagacaaagttattgtccaaagagggatttttattaggcatg |
221 |
Q |
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| T |
30144087 |
aaaagacaaagttattgtccaaatagggatttttattaggcatg |
30144130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 30036068 - 30036126
Alignment:
| Q |
52 |
ttcaaacttacaaagttcatttgtggacaaagcataatccatacagattattgagcata |
110 |
Q |
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| T |
30036068 |
ttcaaactaacaaagttcatttgcagacaaagcataatcaatacaaattattgagcata |
30036126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 30151804 - 30151862
Alignment:
| Q |
52 |
ttcaaacttacaaagttcatttgtggacaaagcataatccatacagattattgagcata |
110 |
Q |
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|||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||| |
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| T |
30151804 |
ttcaaactaacaaagttcatttgcagacaaagcataatcaatacaaattattgagcata |
30151862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 34229216 - 34229151
Alignment:
| Q |
46 |
aatacattcaaacttacaaagtt-catttgtggacaaagcataatccatacagattattgagcata |
110 |
Q |
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|||||||||||||| |||||||| ||||| |||||| | || ||||||| || ||||||||||||| |
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| T |
34229216 |
aatacattcaaactaacaaagtttcatttctggacagaccagaatccattcaaattattgagcata |
34229151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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