View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_3 (Length: 445)
Name: NF9983_low_3
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 7715568 - 7715986
Alignment:
| Q |
17 |
actttgaaagccttatactgaatggctgtgccaaagaagaatatccccgtcaacaacataataactggaccactaaaatcccaatttaccaagctaaaaa |
116 |
Q |
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| T |
7715568 |
actttgaaagccttatactgaatggctgtgccaaagaagaatatccccgtcaacaacataataactggaccactaaaatcccaatttaccaagctaaaaa |
7715667 |
T |
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| Q |
117 |
ggtgtatggtctcgatgggatctaatttgaacccaaaaggaaaaataaaaatatccctaacccctactaagacaaacattccagttgtatgttgttgctt |
216 |
Q |
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| T |
7715668 |
ggtgtatggtctcgatgggatctaatttgaacccaaaaggaaaaataaaaatatccctaacccctactaagacaaacattccagttgtatgttgttgctt |
7715767 |
T |
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| Q |
217 |
ttgaggaatgcaattttattcgttcccaaagtttattttagtaataattgtgttgtttgttttatactactccacatgacatttctaataaaaatatgtt |
316 |
Q |
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| T |
7715768 |
ttgaggaatgcaattttattcgttcccaaagtttattttagtaataattgtgttgtttgttttatactactccacatgacatttctaataaaaatatgtt |
7715867 |
T |
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| Q |
317 |
gaatacatttgcatgcatgcagtataagaaatccttccacgatacccacgtggcatcttggtatatgttatttttgtgtagcactttggttgatgatatt |
416 |
Q |
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| T |
7715868 |
gaatacatttgcatgcatgcagtataagaaatccttccacgatacccacgtggcatcttggtatatgttatttttgtgtagcactttggttgatgatatt |
7715967 |
T |
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| Q |
417 |
atagaatttggatcctttg |
435 |
Q |
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| T |
7715968 |
atagaatttggatcctttg |
7715986 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 32961101 - 32961034
Alignment:
| Q |
185 |
aagacaaacattccagttgtatgttgttgcttttgaggaatgcaattttattcgttcccaaagtttat |
252 |
Q |
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| T |
32961101 |
aagacagacattccagttgtatcttgttgcttttgaggaatataattttatgtgttcccgaagtttat |
32961034 |
T |
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