View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_6 (Length: 309)
Name: NF9983_low_6
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 1597825 - 1597543
Alignment:
| Q |
18 |
gaaactacacaaaagagagcatactaatactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtagg |
117 |
Q |
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| T |
1597825 |
gaaactacacaaaagagagcatactaatactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtagg |
1597726 |
T |
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| Q |
118 |
aagatagtctcttgtttctttgttgagatatcttttcacagataccaatgaacggaacttctgtcctgtgtgtggctctatgtaacactagaagaaaata |
217 |
Q |
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| T |
1597725 |
aagatagtctcttgtttctttgttgagatatcttttcacagataccaatgaacggaacttctgtcctgtgtgtggctctatgtaacactagaagaaaata |
1597626 |
T |
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| Q |
218 |
aataagattcaaaattaattgatagaatggtctcaaaacacattcaacccagcaatcctacacaattgtcgcattgtctgtgc |
300 |
Q |
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| T |
1597625 |
aataagattcaaaattaattgatagaatggtctcaaaacacattcaactcagcaatcctacacaattgtcgcattgtctgtgc |
1597543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 1596993 - 1596842
Alignment:
| Q |
51 |
aaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttctttgttgagatatct |
150 |
Q |
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| T |
1596993 |
aaactgatctaaacatgaaattagaactcacagtgtttttgttttctgatatcattctgtcagtaggaaggtagtctcttgtttctgcatttagatatct |
1596894 |
T |
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| Q |
151 |
tttcacagataccaatgaacggaacttctgtcctgtgtgtggctctatgtaa |
202 |
Q |
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| T |
1596893 |
ctggacagatgccaaagaacggaacttatgtccagtgcgcggctctaagtaa |
1596842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 556052 - 555967
Alignment:
| Q |
65 |
atgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttctttgttgagatatct |
150 |
Q |
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| T |
556052 |
atgaaattagaactcacggtgtctttgtcttctgatatcactctaccagtaggaggattgtctcttgtttctttattaagatatct |
555967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 554971 - 554881
Alignment:
| Q |
44 |
atactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgtttct |
136 |
Q |
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| T |
554971 |
atactagaaactgatacaaacatgaaattataactcaa--tgtttttgttttctgatatcattctctcagtaggaagatagtctcttgtttct |
554881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 41218837 - 41219001
Alignment:
| Q |
44 |
atactagaaactgatgtgaacatgaaattagaactcacggtgtctttgttttctgatatcactctgtcagtaggaagatagtctcttgttt---ctttgt |
140 |
Q |
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| T |
41218837 |
atactagaaactgacgtaaacatgaaatt-gaactcacagtgttcttgttttctgatatcattctctcagtagaaagatagtcttttgtttctcctccat |
41218935 |
T |
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| Q |
141 |
tgagatatcttttcacagataccaatgaacggaacttctgtcctgtgtgtggctctatgtaacact |
206 |
Q |
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| T |
41218936 |
ttagatatctgtgaacagataccaaagaacggaatttctgtccagtgtgtggctctatgtaacact |
41219001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 41224472 - 41224583
Alignment:
| Q |
91 |
gttttctgatatcactctgtcagtaggaagatagtctcttgtttctttgttgagatatcttttcacagataccaatgaacggaacttctgtcctgtgtgt |
190 |
Q |
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| T |
41224472 |
gttttctgatatcattctttcagtaggaagatagtctcttgcttctgccataagatatctctgaacagatgtcaaagaacggaacttctgtccagtgcgt |
41224571 |
T |
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| Q |
191 |
ggctctatgtaa |
202 |
Q |
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| T |
41224572 |
ggctctatgtaa |
41224583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 202
Target Start/End: Original strand, 41226040 - 41226156
Alignment:
| Q |
89 |
ttgttttctgatatcactctgtcagtaggaagatagtctcttgtttctttg---ttgagatatcttttcacagataccaatgaacggaacttctgtcctg |
185 |
Q |
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| T |
41226040 |
ttgttttctgatatgattctttgagtaggaagatagtctcctgtttctcctccatttagatatcgctgaaccgataccaaagatcggaacttttgtccgg |
41226139 |
T |
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| Q |
186 |
tgtgtggctctatgtaa |
202 |
Q |
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| T |
41226140 |
tgtgtggctctatgtaa |
41226156 |
T |
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