View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_7 (Length: 307)
Name: NF9983_low_7
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 40762943 - 40763228
Alignment:
| Q |
9 |
ctgagaagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttatttatatgcaggagtatttaaattac |
108 |
Q |
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| T |
40762943 |
ctgataagaatcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttatttatatgcaggagtatttaaattac |
40763042 |
T |
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| Q |
109 |
tatagtcctagctcctaagtgtattgaaattacaaaatagtatatgagtatgnnnnnnnngttagtaatttcatgg-accaaactaataaacggaaaaca |
207 |
Q |
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| T |
40763043 |
tatagtcctagctcctaagtgtattgaaattacaaaatagtatatgagtat---------gtt-----ttttttggtaccaaactaataaacggaaaaca |
40763128 |
T |
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| Q |
208 |
tatttgactttgagtgtgccaaaaccgaatgtcacttttatccgcctattttaatcaatataccgatagaacaacagaattaagatacatctttattgga |
307 |
Q |
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| T |
40763129 |
tatttgactttgagtgtgtcaaaaccgaatgtcacttttatccgcctattttaatcaatatactgatagaacaacagaattaagatacatctttattgga |
40763228 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 42910360 - 42910424
Alignment:
| Q |
19 |
tcttgagttcttgcgtaacttcgttcaccttcgttccagaaccaacacggtacgcttctttttat |
83 |
Q |
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| T |
42910360 |
tcttgaatccttgcgtgattttgttcaccttcgttcaagaaccaacacggtgcgtttctttttat |
42910424 |
T |
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