View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9983_low_8 (Length: 306)
Name: NF9983_low_8
Description: NF9983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9983_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 6214329 - 6214087
Alignment:
| Q |
18 |
acattattatatatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaac |
117 |
Q |
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| T |
6214329 |
acattattatatatgcaggttggagggtatgtgattggttacaaagggctcacactaatcactgtaagaggagctgggcacatggttccaactgaccaac |
6214230 |
T |
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| Q |
118 |
cataccgagcactaaccatgatctcatctttccttcttggacaacttcctcctcaattnnnnnnntcttaagtctattcagtgtatcaataaaatttatg |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||| |
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| T |
6214229 |
cataccgagcactaaccgtgatctcatctttccttcttggacaacttcctcctcaattaaaatcttaattagtctattcagtgtatcaataaaatgtatg |
6214130 |
T |
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| Q |
218 |
tgaaaaatttacaataattcatcaaaatatgtgtgctccattt |
260 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
6214129 |
tgaacaatttacaataattcatcaaaatatgtgtgctctattt |
6214087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 28 - 269
Target Start/End: Complemental strand, 6206569 - 6206319
Alignment:
| Q |
28 |
atatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagc |
127 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6206569 |
atatgcaggttggagggtatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaactgaccaaccataccgagc |
6206470 |
T |
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| Q |
128 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaattnnnnnnntcttaagtctattcagtgtatcaataaaatttatgtgaaaaatt- |
226 |
Q |
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| T |
6206469 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt---aaaatcttaagtctattcagtgtatcaataaaatttatgtgaaaaattt |
6206373 |
T |
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| Q |
227 |
-----------tacaataattcatcaaaatatgtgtgctccatttctaaattat |
269 |
Q |
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| T |
6206372 |
gacgagtttcatacaataattcatcaaaatatgtgtgctctatttctaaattat |
6206319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 6176756 - 6176609
Alignment:
| Q |
28 |
atatgcaggttggaggatatgtgattggttacaaagggctcacactagtcactgtaagaggagctggacacatggttccaagtgaccaaccataccgagc |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176756 |
atatgcaggttggaggatatgtgattggttacaaagggctcgcacttgttactgttagaggagctggacacatggttccaagtgaccaaccataccgagc |
6176657 |
T |
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| Q |
128 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176656 |
actaaccatgatctcatctttccttcttggacaacttcctcctcaatt |
6176609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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