View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9984_3 (Length: 304)
Name: NF9984_3
Description: NF9984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9984_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 34885570 - 34885267
Alignment:
| Q |
1 |
cctacctcgccggtttcgtaatggccaacatcgtcggcattaaacactactccggcaccatcaccggtcgcgaaatcctcggcttaatccgcgaaccttt |
100 |
Q |
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| T |
34885570 |
cctacctcgccggtttcgtaatggccaacatcgtcggcattaaacactactccggcaccatcaccggtcgcgaaatcctcggcttaatccgcgaaccttt |
34885471 |
T |
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| Q |
101 |
aaacccatacgattccaacgccatcaaagtcctcaacactcaaacgctccaagtcggttacatcgaacgctccgtcgcctccgctctcgctcctctcctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
34885470 |
aaacccatacgattccaacgccatcaaagtcctcaacactcaaacgctccaagtcggttacatcgaacgcgccgttgcctccgctctcgctcctctcctc |
34885371 |
T |
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| Q |
201 |
gacgctcacatcatccacgtcgaagccatcgttcaaccccgctctaacaataacaaattccgtatcccttgtcagattcatatcttcgctcatcaatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34885370 |
gacgctcacatcatccacgtcgaagccatcgttcaaccccgctctaacaataacaaattccgtatcccttgtcagattcatatcttcgctcatcaatctt |
34885271 |
T |
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| Q |
301 |
cttt |
304 |
Q |
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|||| |
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| T |
34885270 |
cttt |
34885267 |
T |
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