View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_high_7 (Length: 412)
Name: NF9985A_high_7
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 33614869 - 33614739
Alignment:
| Q |
108 |
ttatgttgaattaatagaaactcagatgtggaattctcagtgatgatcaaaacgatgacgtgtctgatgaaatccattcaaaacaattgtgaggacaaaa |
207 |
Q |
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| T |
33614869 |
ttatgttgaattaatagaaattcagatgtggaattctcagtgatgatcaaaacgatgacgagtctgatgaaatccattcaaaacaattgtgaggacaaaa |
33614770 |
T |
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| Q |
208 |
cgaggcatttgtctgagagaattgcacactt |
238 |
Q |
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| T |
33614769 |
cgaggcatttgtctgagagaattccacactt |
33614739 |
T |
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Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 29159931 - 29160051
Alignment:
| Q |
119 |
taatagaaactcagatgtggaattctcagtgatgatcaaaacgatgacgtgtctgatgaaat--ccattcaaaacaattgtgaggacaaaacgaggcatt |
216 |
Q |
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| T |
29159931 |
taataggaactcagatgtggtattctcagtgatgattaaaacgatgacgagtctgatgaaatttccattcaaaacaattgtgaggacaaaacgaggcatt |
29160030 |
T |
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| Q |
217 |
tgtctgagagaattgcacact |
237 |
Q |
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| T |
29160031 |
tgtctgagagaattccacact |
29160051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 38745861 - 38745781
Alignment:
| Q |
315 |
gatcatcgttaacgattgagattacaaaatagagaaggagagagaagttagagtttcaacggtatcattaacataacatta |
395 |
Q |
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| T |
38745861 |
gatcatcgttaacgatagagattacaaaatagagaaggagaaagaagttagaatttcaacagtatcattaacataacatta |
38745781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 38745874 - 38745815
Alignment:
| Q |
257 |
gctcttatcatgtgatcatcgttaacgatagagatta-aaaatagagaaggagaaagaag |
315 |
Q |
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| T |
38745874 |
gctcttatcgcgtgatcatcgttaacgatagagattacaaaatagagaaggagaaagaag |
38745815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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