View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_106 (Length: 336)
Name: NF9985A_low_106
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_106 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 9985586 - 9985264
Alignment:
| Q |
8 |
aaaaatataatttagggcctatcacaattttcttggcctatatggtagcctacaatataatatggacacaaattgtcacaaaaacttggtcactctaggg |
107 |
Q |
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| T |
9985586 |
aaaaatataatttagggcctatcacaattttcttggcctatatggtagcctacaatataatatggacacaaattgtcacaaaaacttggtcactctagag |
9985487 |
T |
|
| Q |
108 |
aaagacatggaacataaggtatacatgaagtgcataccccatttacatttttgcatgatgcatgaatttcctctcctatagaagatgttatgttaatccc |
207 |
Q |
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| T |
9985486 |
aaagacatggaacataaggtatgcatgaagtgcatactccatttacatttttgcatgatgcatgaacttcctctcctatagaagatgttatgttaatccc |
9985387 |
T |
|
| Q |
208 |
ttcaagtataatgtttgtgcaagttatggcttcatcacaatgtaattgaattacatctttagcaatagatgttcctcttatgttgcggaaagttacatca |
307 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9985386 |
ttcaagtataatgtttgtgcaagttatgtcttcatcacaatgtaattgaattgcatgtttagcaatagatgttcctcttatgttgcggaaagttacatca |
9985287 |
T |
|
| Q |
308 |
cttactttcactgcatatacact |
330 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
9985286 |
cttactttcactgcatatgcact |
9985264 |
T |
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