View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_107 (Length: 336)

Name: NF9985A_low_107
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_107
NF9985A_low_107
[»] chr6 (16 HSPs)
chr6 (6-336)||(4564413-4564743)
chr6 (6-270)||(4592933-4593199)
chr6 (10-245)||(4617728-4617963)
chr6 (19-245)||(4602504-4602730)
chr6 (168-245)||(4506718-4506795)
chr6 (163-245)||(3172597-3172679)
chr6 (16-245)||(4517030-4517259)
chr6 (157-245)||(4481543-4481631)
chr6 (168-245)||(4514315-4514392)
chr6 (173-245)||(4489555-4489627)
chr6 (172-245)||(4461988-4462061)
chr6 (208-244)||(4266358-4266394)
chr6 (177-243)||(4568906-4568970)
chr6 (165-247)||(4571830-4571912)
chr6 (156-241)||(4561353-4561438)
chr6 (156-241)||(4575157-4575242)
[»] scaffold0199 (1 HSPs)
scaffold0199 (23-245)||(183-405)
[»] chr8 (2 HSPs)
chr8 (23-245)||(1674946-1675168)
chr8 (177-245)||(20863037-20863105)
[»] chr3 (1 HSPs)
chr3 (7-240)||(1281817-1282050)
[»] chr5 (1 HSPs)
chr5 (208-243)||(24103903-24103938)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 4564413 - 4564743
Alignment:
Q  6 catagaggagagagcatttattacatcaatctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattaca 105  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4564413 catagaggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgcatcaattaca 4564512  T
Q  106 aagtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  4564513 aagtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatctacattagttt 4564612  T
Q  206 ccaaatatccatttgttagatagctctcatctgcatatcaaaagtatcagttaatatcttgaaggttatacatacatccgtcaatacatgagtattttgt 305  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  4564613 ccaaatatccatttgttagatagctctgatctgcatatcaaatgtatcagttaatatcttgaaggttatacatacatccgtacatacatgagtattttgt 4564712  T
Q  306 tttcgacaaaaacatacatatataataaggt 336  Q
    |||||||||||||||||||||||||||||||    
T  4564713 tttcgacaaaaacatacatatataataaggt 4564743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 4592933 - 4593199
Alignment:
Q  6 catagaggagagagcatttattacatcaatctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattaca 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |  | || ||||||||||| |||||||||||    
T  4592933 catagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccacatcaattaca 4593032  T
Q  106 aagtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtta 205  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||   || ||||| || |||||||||||||||||||||||||||||||| ||||||     
T  4593033 aagtttaacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatctactttagttt 4593132  T
Q  206 ccaaatatccatttgttagatagctctcatctgcatatcaaaagtatc--agttaatatcttgaagg 270  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||    
T  4593133 ccaaatatccatttgttagataactctcatctgcatatcaaaagtagcaaagttaatagcttgaagg 4593199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 4617728 - 4617963
Alignment:
Q  10 gaggagagagcatttattacatcaatctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagt 109  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||     ||||  ||| ||  | || || |  || |    
T  4617728 gaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtctttgttaactcgatctgcaacttctataaagaatt 4617827  T
Q  110 ctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagttaccaa 209  Q
    ||||||||||||||||||||| |||||||||||||  ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| |||||| ||||    
T  4617828 ctaacataatatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaa 4617927  T
Q  210 atatccatttgttagatagctctcatctgcatatca 245  Q
    | |||||||||||||||| |||||||||||||||||    
T  4617928 acatccatttgttagataactctcatctgcatatca 4617963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 4602504 - 4602730
Alignment:
Q  19 gcatttattacatcaatctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataa 118  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| ||| |||||||||| |  || | |||| ||    ||||  |  || |||| |||||    
T  4602504 gcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa 4602603  T
Q  119 tatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatccatt 218  Q
    ||||||||||||||||||||||||||  |||||  || ||||| || |||||||||||||||||||||||||||||||| || ||| ||||| |||||||    
T  4602604 tatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt 4602703  T
Q  219 tgttagatagctctcatctgcatatca 245  Q
    ||||||||| || ||||||||||||||    
T  4602704 tgttagataactatcatctgcatatca 4602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 4506718 - 4506795
Alignment:
Q  168 aaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatatca 245  Q
    ||||||| |||||||||||||||| ||||| |||||  |||||||||||||||||||||| |||||||||||||||||    
T  4506718 aaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatca 4506795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 3172597 - 3172679
Alignment:
Q  163 aatcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatatca 245  Q
    |||| |||||||||||||||||||||||| || ||  ||||  |||||||||||||||||  ||| |||||||||||||||||    
T  3172597 aatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatca 3172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 4517030 - 4517259
Alignment:
Q  16 agagcatttattacatcaatctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaaca 115  Q
    |||||||||||||||||| ||||||||||||   ||||||| |||||||| | |    || || ||||  |||| ||||| ||||| | ||| | || ||    
T  4517030 agagcatttattacatcattctcaagttcatcagaagtattgaaaacaatagaattagcttcatgaaccctatcggccgcttcaatgataaattttatca 4517129  T
Q  116 taatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatcc 215  Q
    | |||||||| ||||| || || || |||  ||||   |  ||||||| || |||||||  ||||||||||||||| || || |||||  ||||||||||    
T  4517130 ttatatcattaggatcagtagttcttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatcc 4517229  T
Q  216 atttgttagatagctctcatctgcatatca 245  Q
    |||||| | ||| |||||||||||||||||    
T  4517230 atttgtcaaataactctcatctgcatatca 4517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 4481543 - 4481631
Alignment:
Q  157 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatatca 245  Q
    ||||| |||| |||||||||||||||||||||||| |||||  | |   |||||||||||| ||||| ||| |||||||||||||||||    
T  4481543 tccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca 4481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 4514392 - 4514315
Alignment:
Q  168 aaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatatca 245  Q
    |||||||  ||||||||||||||| || || |||||  |||||||||||||||| | ||| |||||||||||||||||    
T  4514392 aaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
Q  173 ttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatatca 245  Q
    ||||||||||||||||||| || || |||||  |||||| ||||| ||||||||  |||||||||||||||||    
T  4489627 ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca 4489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 4461988 - 4462061
Alignment:
Q  172 tttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatatca 245  Q
    |||||||||||||||||||| || || | |||  | |||||||||| |||||||||  ||||||||||||||||    
T  4461988 tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatca 4462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 4266394 - 4266358
Alignment:
Q  208 aaatatccatttgttagatagctctcatctgcatatc 244  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4266394 aaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 4568906 - 4568970
Alignment:
Q  177 caaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatat 243  Q
    ||||||||||||||| || || ||||| ||||||||||||||||| |||||   |||||||||||||    
T  4568906 caaacctggaatccagtcaactttagtgaccaaatatccatttgtcagata--actcatctgcatat 4568970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 4571830 - 4571912
Alignment:
Q  165 tcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatatcaaa 247  Q
    ||||||||| ||||  ||||| || || || || |||||  |||||||||| ||||| ||||| |||||||||||||||||||    
T  4571830 tcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatcaaa 4571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 4561353 - 4561438
Alignment:
Q  156 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcat 241  Q
    |||||| ||||  ||||||||||||||||| ||||| || || || ||  ||| |||| ||||||||||||  |||||||||||||    
T  4561353 atccttcaatctgaagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcat 4561438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 4575157 - 4575242
Alignment:
Q  156 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcat 241  Q
    |||||| ||||  ||||||||||||||||| ||||| || |  || ||  |||||||| ||||||||||||  |||||||||||||    
T  4575157 atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat 4575242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 183 - 405
Alignment:
Q  23 ttattacatcaatctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataatatc 122  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||  ||||||||| ||||||||||||||||||    
T  183 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 282  T
Q  123 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgtt 222  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || ||| |||||||||||||||||    
T  283 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 382  T
Q  223 agatagctctcatctgcatatca 245  Q
    ||||  |||||||||||||||||    
T  383 agatgtctctcatctgcatatca 405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 1674946 - 1675168
Alignment:
Q  23 ttattacatcaatctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaaagtctaacataatatc 122  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||  ||||||||| ||||||||||||||||||    
T  1674946 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 1675045  T
Q  123 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagttaccaaatatccatttgtt 222  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || ||| |||||||||||||||||    
T  1675046 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 1675145  T
Q  223 agatagctctcatctgcatatca 245  Q
    ||||  |||||||||||||||||    
T  1675146 agatgtctctcatctgcatatca 1675168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 20863105 - 20863037
Alignment:
Q  177 caaacctggaatccaatctacattagttaccaaatatccatttgttagatagctctcatctgcatatca 245  Q
    |||||||||||||| ||| || |||||  |||||||||||||||||||||| |||||||||| ||||||    
T  20863105 caaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgtatatca 20863037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 1281817 - 1282050
Alignment:
Q  7 atagaggagagagcatttattacatcaatctcaagttcattgaaagtattcaaaacaattgtagagtctccaggaactttatcagccgcatcaattacaa 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |  |||| |||| |||   ||||| |  |    
T  1281817 atagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaaga 1281916  T
Q  107 agtctaacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagttac 206  Q
    | |||||||||||||| ||| ||||| |||||||||||  |||||  |||||||| || || || |||||||||||||||||||||||||| || ||| |    
T  1281917 attctaacataatatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttc 1282016  T
Q  207 caaatatccatttgttagatagctctcatctgca 240  Q
    ||||||||||||||||||||| ||||||||||||    
T  1282017 caaatatccatttgttagataactctcatctgca 1282050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 24103903 - 24103938
Alignment:
Q  208 aaatatccatttgttagatagctctcatctgcatat 243  Q
    |||||||||||||||||||| |||||||||||||||    
T  24103903 aaatatccatttgttagataactctcatctgcatat 24103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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