View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_109 (Length: 334)
Name: NF9985A_low_109
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_109 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 6236647 - 6236342
Alignment:
| Q |
17 |
ctcaccacccagctttattgcttcttttctctctagagagggttcaggacttccttattataggattttgatgtaattctgccttttctgtttttgtttc |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6236647 |
ctcaccaccctgctttattgcttcttttctctctagagagggttcaggacttccttattataggattttgatgtaattctgccttttctatttttgtttc |
6236548 |
T |
|
| Q |
117 |
ttcctgatgtagaccttgttatgggttctggccctctctagttttattgaatttcttcgcttgatcnnnnnnnnnnnnnnttagattttcacctatcacc |
216 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6236547 |
ttcctgatgtagactttgttatgggttctggccctcttcagttttattgaatttcttcgcttgat--aaaaaaaaaaaaattagattttcacctatcacc |
6236450 |
T |
|
| Q |
217 |
taggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactataatttagaaacac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6236449 |
taggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactaaaatttagaaacac |
6236350 |
T |
|
| Q |
317 |
catgatat |
324 |
Q |
| |
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|||||||| |
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| T |
6236349 |
catgatat |
6236342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 33891807 - 33891908
Alignment:
| Q |
197 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtggga |
296 |
Q |
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||||||||||||| || | |||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33891807 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33891902 |
T |
|
| Q |
297 |
acacta |
302 |
Q |
| |
|
|||||| |
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| T |
33891903 |
acacta |
33891908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 33952441 - 33952340
Alignment:
| Q |
197 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtggga |
296 |
Q |
| |
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||||||||||||| || | |||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33952441 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33952346 |
T |
|
| Q |
297 |
acacta |
302 |
Q |
| |
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|||||| |
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|
| T |
33952345 |
acacta |
33952340 |
T |
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