View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_113 (Length: 333)

Name: NF9985A_low_113
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_113
NF9985A_low_113
[»] chr1 (9 HSPs)
chr1 (10-313)||(24415911-24416214)
chr1 (151-296)||(24310490-24310635)
chr1 (120-298)||(24340654-24340832)
chr1 (120-298)||(24353019-24353197)
chr1 (181-313)||(24367472-24367601)
chr1 (105-298)||(24322997-24323191)
chr1 (236-298)||(24369800-24369862)
chr1 (33-85)||(24310357-24310409)
chr1 (105-149)||(24367390-24367434)
[»] chr5 (6 HSPs)
chr5 (36-298)||(42561973-42562235)
chr5 (231-296)||(9120117-9120182)
chr5 (231-281)||(179412-179462)
chr5 (236-298)||(29688488-29688550)
chr5 (182-216)||(29712166-29712200)
chr5 (243-295)||(29696602-29696654)
[»] chr4 (33 HSPs)
chr4 (231-298)||(7878737-7878804)
chr4 (238-298)||(7790441-7790501)
chr4 (238-298)||(7908663-7908723)
chr4 (234-295)||(48156072-48156133)
chr4 (25-295)||(49040795-49041067)
chr4 (244-296)||(50666682-50666734)
chr4 (243-298)||(7771761-7771816)
chr4 (231-298)||(7773465-7773532)
chr4 (234-293)||(48147358-48147417)
chr4 (182-295)||(48863573-48863683)
chr4 (237-298)||(48864395-48864456)
chr4 (237-298)||(49038518-49038579)
chr4 (231-296)||(49043810-49043875)
chr4 (238-298)||(7813838-7813898)
chr4 (231-298)||(45371714-45371781)
chr4 (231-298)||(48853035-48853102)
chr4 (243-295)||(7237386-7237438)
chr4 (238-298)||(7786825-7786885)
chr4 (238-298)||(7800998-7801058)
chr4 (236-298)||(45384532-45384594)
chr4 (25-158)||(48863392-48863528)
chr4 (238-288)||(48903316-48903366)
chr4 (247-296)||(37826632-37826681)
chr4 (238-287)||(47208238-47208287)
chr4 (238-298)||(7766003-7766063)
chr4 (21-76)||(49044057-49044112)
chr4 (48-85)||(48852849-48852886)
chr4 (231-296)||(49048197-49048262)
chr4 (231-283)||(45365875-45365927)
chr4 (251-291)||(48735058-48735098)
chr4 (246-298)||(48870929-48870981)
chr4 (246-298)||(48876233-48876285)
chr4 (246-298)||(48886615-48886667)
[»] chr6 (3 HSPs)
chr6 (21-85)||(21015965-21016029)
chr6 (231-293)||(21016175-21016237)
chr6 (244-284)||(14197337-14197377)
[»] chr3 (4 HSPs)
chr3 (238-295)||(11024146-11024203)
chr3 (236-295)||(11015134-11015193)
chr3 (238-295)||(11005571-11005628)
chr3 (231-268)||(47451570-47451607)
[»] chr7 (2 HSPs)
chr7 (231-298)||(48884178-48884245)
chr7 (243-284)||(30130916-30130957)
[»] chr8 (6 HSPs)
chr8 (238-298)||(15349244-15349304)
chr8 (236-295)||(12195683-12195742)
chr8 (236-295)||(12440111-12440170)
chr8 (236-286)||(4031578-4031628)
chr8 (233-271)||(4962186-4962224)
chr8 (108-160)||(10178221-10178273)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 313
Target Start/End: Original strand, 24415911 - 24416214
Alignment:
Q  10 cgtgttctggttctgattatcccgtggtagagtcggtctttaatggggctattcattggttagctttccgtcatgagatagatttctttgttgcagcctt 109  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24415911 cgtgttctggttctgattatcctgtggtagagtcggtcttcaatggggctattcattggttagctttccgtcatgagatagatttctttgttgcagcctt 24416010  T
Q  110 tcatttaacggaaaggaaacttctagagattcctctcccaaatgatattgaattttggtctacagattatagtttatgggtatttagaggatttctcagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24416011 tcatttaacggaaaggaaacttctagagattcctctcccaagtgatattgaattttggtctacagattatagtttatgggtatttagaggatttctcagt 24416110  T
Q  210 ctatgggttttgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttctcaacatggata 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24416111 ctatgggttttgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttctcaacatggata 24416210  T
Q  310 ccat 313  Q
    ||||    
T  24416211 ccat 24416214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 151 - 296
Target Start/End: Original strand, 24310490 - 24310635
Alignment:
Q  151 atgatattgaattttggtctacagattatagtttatgggtatttagaggatttctcagtctatgggttttgaggtttaaggatagagttgatatatgggt 250  Q
    |||||||||||| | | || ||||||| |||||||||||||||||||||||||||||||||||||||| |||||    |||||| |||||||||||||||    
T  24310490 atgatattgaatatggttcgacagattgtagtttatgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggt 24310589  T
Q  251 gatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 296  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||    
T  24310590 gatgaaagaatacaaagtgcagtcttcttggagtaaaactcttgtt 24310635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 120 - 298
Target Start/End: Original strand, 24340654 - 24340832
Alignment:
Q  120 gaaaggaaacttctagagattcctctcccaaatgatattgaattttggtctacagattatagtttatgggtatttagaggatttctcagtctatgggttt 219  Q
    |||||||||||| ||||||||||||||||| ||||| ||||   | | | ||| | || | |||||||||||| |||||||||||| ||||||||||||     
T  24340654 gaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagaggatttctaagtctatgggtta 24340753  T
Q  220 tgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||  |  | ||||||  |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  24340754 tggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24340832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 120 - 298
Target Start/End: Original strand, 24353019 - 24353197
Alignment:
Q  120 gaaaggaaacttctagagattcctctcccaaatgatattgaattttggtctacagattatagtttatgggtatttagaggatttctcagtctatgggttt 219  Q
    |||||||||||| ||||||||||||||||| ||||| ||||   | | | ||| | || | |||||||||||| |||||||||||| ||||||||||||     
T  24353019 gaaaggaaacttgtagagattcctctcccagatgattttgaccatggttatacggtttgtggtttatgggtatgtagaggatttctaagtctatgggtta 24353118  T
Q  220 tgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||  |  | ||||||  |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  24353119 tggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggactaaaactcttgttct 24353197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 181 - 313
Target Start/End: Original strand, 24367472 - 24367601
Alignment:
Q  181 gtttatgggtatttagaggatttctcagtctatgggttttgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |  |||| | || |||||||||| ||| |||||||||||||||| || |||||    
T  24367472 gtttatgggtatttagaggatttctcagtctatgggttttgagg---agagatacactttatatatgggtaatggaagaatacaaagtgcattcgtcttg 24367568  T
Q  281 gactaaaactcttgttctcaacatggataccat 313  Q
    |||||||||||||||||| |  |||||||||||    
T  24367569 gactaaaactcttgttctaactatggataccat 24367601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 298
Target Start/End: Original strand, 24322997 - 24323191
Alignment:
Q  105 gcctttcatttaacggaaaggaaacttctagagattcctctcccaaatgatattgaattttggtctacagattatagtttatgggtatttagaggatttc 204  Q
    |||||| || ||| |||||| ||| || ||||||||||| ||| | ||||||||||  ||| |   | ||||||| ||||||||||||||||||||||||    
T  24322997 gcctttgatctaatggaaagaaaatttgtagagattcctttcctagatgatattgatgtttcg---aaagattatggtttatgggtatttagaggatttc 24323093  T
Q  205 tcagtctatgggttttg-aggtttaaggatagagttgatatatggg----tgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
     |||||||||||||||| |||  |  || || ||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24323094 ccagtctatgggttttggaggacttggg-taaagttgatatatgggtgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttct 24323191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 24369800 - 24369862
Alignment:
Q  236 agttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||||||||||||||||||| || | ||   |||||| ||||||||||||||||||||||||||    
T  24369800 agttgatatatgggtgatggaatagtatggagtgcattcatcttggactaaaactcttgttct 24369862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 24310357 - 24310409
Alignment:
Q  33 gtggtagagtcggtctttaatggggctattcattggttagctttccgtcatga 85  Q
    ||||||||||| ||||| |||||||||||||| ||||| ||| | ||||||||    
T  24310357 gtggtagagtccgtcttcaatggggctattcactggttggctattcgtcatga 24310409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 24367390 - 24367434
Alignment:
Q  105 gcctttcatttaacggaaaggaaacttctagagattcctctccca 149  Q
    ||||||| ||||| ||||||||||||||| || ||||||||||||    
T  24367390 gcctttcttttaatggaaaggaaacttctcgatattcctctccca 24367434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 298
Target Start/End: Complemental strand, 42562235 - 42561973
Alignment:
Q  36 gtagagtcggtctttaatggggctattcattggttagctttccgtcatgagatagatttctttgtt---gcagcctttcatttaacggaaaggaaacttc 132  Q
    ||||||||| |||| |||||||||||||| ||||| ||| | |||||||| ||| ||  |  ||||   |  ||||||||||||||||||||||||||||    
T  42562235 gtagagtcgttcttcaatggggctattcactggttggctcttcgtcatgatatatatgaccatgttattgttgcctttcatttaacggaaaggaaacttc 42562136  T
Q  133 tagagattcctctcccaaatgatattgaattttggtctacagattatagtttatgggtatttagaggatttctcagtctatgggttttgaggtttaagga 232  Q
    ||||||||| ||| |||| ||||||| | | |   || | || || | |||| |||||||||||||||||||||||||||||| ||||||||    | ||    
T  42562135 tagagattcttcttccaattgatattaattataattccaaaggttgtggtttttgggtatttagaggatttctcagtctatggattttgaggg---acga 42562039  T
Q  233 tagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||  ||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||    
T  42562038 taatgttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattcttgttct 42561973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 9120117 - 9120182
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 296  Q
    |||| |||||| ||||||||||||||||||||||||||||| || |||||||  ||||||||||||    
T  9120117 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgtt 9120182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 179412 - 179462
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttgg 281  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||||||    
T  179412 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 29688488 - 29688550
Alignment:
Q  236 agttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||||| ||||||||||||||| ||||||| ||||| || |||||||| || ||||| |||||    
T  29688488 agttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttct 29688550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 29712200 - 29712166
Alignment:
Q  182 tttatgggtatttagaggatttctcagtctatggg 216  Q
    |||||||||||||||||||| ||||||||||||||    
T  29712200 tttatgggtatttagaggatgtctcagtctatggg 29712166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 29696602 - 29696654
Alignment:
Q  243 atatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
    |||||||||||| || ||||||| ||||| || ||||||||||| ||||||||    
T  29696602 atatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactcttgt 29696654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 7878737 - 7878804
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| |||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  7878737 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttct 7878804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 7790441 - 7790501
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttct 7790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 7908663 - 7908723
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttct 7908723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 48156133 - 48156072
Alignment:
Q  234 agagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
    |||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  48156133 agagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 49041067 - 49040795
Alignment:
Q  25 attatcccgtggtagagtcggtctttaatggggctattcattggttagctttccgtcatgagatagatttctttgttgcag----cctttcatttaac-g 119  Q
    |||||||| ||||||| ||| |||| || ||||||||||||||||| ||||| |||||||| |||  | | | ||||   |    ||||||||||||  |    
T  49041067 attatcccatggtagactcgttcttcaacggggctattcattggttggcttttcgtcatgatatatgtgtttatgttattgttgtcctttcatttaatag 49040968  T
Q  120 gaaaggaaacttctagagattcctctcccaaatgatattgaattttggtctacagattatagtttatgggtatttagaggatttctcagtctatgggttt 219  Q
    |||||| ||||||||  ||| ||||||||| |||||||||||  |   ||||  |||  |  |||||||||||||| |||||||||||||||||||||||    
T  49040967 gaaagggaacttctattgatacctctcccagatgatattgaaaatgattctaatgatcgtgatttatgggtatttaaaggatttctcagtctatgggttt 49040868  T
Q  220 tgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
     | ||    |  |||  |||||||||||||||||| |||||||   |||||| |||||||||| ||||| ||||||    
T  49040867 cgggg---gatcatacggttgatatatgggtgatggaagaatatggagtgcattcatcttggattaaaattcttgt 49040795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 50666682 - 50666734
Alignment:
Q  244 tatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 296  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  50666682 tatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 7771761 - 7771816
Alignment:
Q  243 atatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  7771761 atatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttct 7771816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 7773532 - 7773465
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| |||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||    
T  7773532 gatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttct 7773465  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 48147417 - 48147358
Alignment:
Q  234 agagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactctt 293  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||    
T  48147417 agagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 48863573 - 48863683
Alignment:
Q  182 tttatgggtatttagaggatttctcagtctatgggttttgaggtttaaggatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttgg 281  Q
    |||||||||||||||||||| ||||||||||||||||| | ||  | |   ||  ||||| |||||||||||| ||||||||  |||||| |||||||||    
T  48863573 tttatgggtatttagaggatctctcagtctatgggtttcgggggatca---taaggttgacatatgggtgatggaagaatacggagtgcattcatcttgg 48863669  T
Q  282 actaaaactcttgt 295  Q
    | ||||||||||||    
T  48863670 attaaaactcttgt 48863683  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 48864395 - 48864456
Alignment:
Q  237 gttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||| | |||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttct 48864456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 49038579 - 49038518
Alignment:
Q  237 gttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||||||    
T  49038579 gttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactcttgttct 49038518  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 49043875 - 49043810
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 296  Q
    |||| |||||| ||||||||||||||||||||||||||||| || || |||||||| |||||||||    
T  49043875 gatatagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgtt 49043810  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 7813838 - 7813898
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttct 7813898  T

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Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 45371781 - 45371714
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| |||||| |||||||| |||||||||||||||||||| || ||||||||||| ||| |||||||    
T  45371781 gatacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttct 45371714  T

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Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 48853035 - 48853102
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| |||||| |||||||| |||||||||||||||||||  || ||||||||||| |||||||||||    
T  48853035 gatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttct 48853102  T

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Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 7237438 - 7237386
Alignment:
Q  243 atatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
    |||||||||||||||||||||||| |||| || | ||||||||||||||||||    
T  7237438 atatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 7786825 - 7786885
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| ||||||||||||||||||||||| ||||| | |||||||| ||| |||||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttct 7786885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 7800998 - 7801058
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| ||||||||| ||||||| ||||||||||| || ||||||| |||||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttct 7801058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 45384594 - 45384532
Alignment:
Q  236 agttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||||| |||||||||||||||||||| |||||||| || |||||||| || |||| ||||||    
T  45384594 agttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttct 45384532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 48863392 - 48863528
Alignment:
Q  25 attatcccgtggtagagtcggtctttaatggggctattcattggttagctttccgtcatgagatagatttct---ttgttgcagcctttcatttaacgga 121  Q
    |||||||| ||||||| ||  |||| || ||||||||||||||||| ||||| |||||||| |||| | | |   || |||  ||||||| |||||||||    
T  48863392 attatcccatggtagactccttcttcaacggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcctttcgtttaacgga 48863491  T
Q  122 aaggaaacttctagagattcctctcccaaatgatatt 158  Q
    |||| ||||||||  ||| ||||||| | ||||||||    
T  48863492 aagggaacttctattgatacctctcctagatgatatt 48863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 48903316 - 48903366
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaa 288  Q
    |||| ||||||||||||||||||||||||||||| |  |||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaaaa 48903366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 37826681 - 37826632
Alignment:
Q  247 gggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 296  Q
    |||||||||||||||||||| |||| || ||||||||||| |||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 47208238 - 47208287
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaa 287  Q
    |||| ||| |||||||||||||||||||||| || |||||||||||||||    
T  47208238 ttgaaataagggtgatgaaagaatacaaagtacaatcatcttggactaaa 47208287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 7766003 - 7766063
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| ||||||||||||||||||||||||||| | || || |||||||| || ||||||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttct 7766063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 49044112 - 49044057
Alignment:
Q  21 tctgattatcccgtggtagagtcggtctttaatggggctattcattggttagcttt 76  Q
    ||||||||| || |||||| |||| ||||||||||||||||||| ||||| |||||    
T  49044112 tctgattattccatggtagggtcgctctttaatggggctattcactggttggcttt 49044057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 48852849 - 48852886
Alignment:
Q  48 tttaatggggctattcattggttagctttccgtcatga 85  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  48852849 tttaatggggctattcattggttggcttttcgtcatga 48852886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 49048262 - 49048197
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgtt 296  Q
    |||| |||||| ||||||||||||||||| || |||||||| || || |||||||| ||| |||||    
T  49048262 gatatagttgaaatatgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgtt 49048197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 45365927 - 45365875
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggac 283  Q
    |||| |||||| |||||||||||||||||||| |||||||  || ||||||||    
T  45365927 gatacagttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggac 45365875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 48735098 - 48735058
Alignment:
Q  251 gatgaaagaatacaaagtgcagtcatcttggactaaaactc 291  Q
    ||||||||||||||||||| | || ||||||||||||||||    
T  48735098 gatgaaagaatacaaagtgaattcgtcttggactaaaactc 48735058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 48870929 - 48870981
Alignment:
Q  246 tgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||||||||||| |||||||||||| | || |||||||| || |||||||||||    
T  48870929 tgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttct 48870981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 48876233 - 48876285
Alignment:
Q  246 tgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||||||||||| |||||||||||| | || |||||||| || |||||||||||    
T  48876233 tgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttct 48876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 48886615 - 48886667
Alignment:
Q  246 tgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    ||||||||||| |||||||||||| | || |||||||| || |||||||||||    
T  48886615 tgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttct 48886667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 21015965 - 21016029
Alignment:
Q  21 tctgattatcccgtggtagagtcggtctttaatggggctattcattggttagctttccgtcatga 85  Q
    ||||||||| || |||||| |||||| ||||||||||||||||||||||| ||||| ||||||||    
T  21015965 tctgattattccatggtagggtcggtttttaatggggctattcattggttggcttttcgtcatga 21016029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 21016175 - 21016237
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactctt 293  Q
    |||| |||||| |||||||| ||||||||||||||||| || || ||||||||||| ||||||    
T  21016175 gatatagttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactctt 21016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  244 tatgggtgatgaaagaatacaaagtgcagtcatcttggact 284  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 11024203 - 11024146
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
    |||| |||||||| |||||||||||||||||||| || ||||||||||| ||||||||    
T  11024203 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 11015193 - 11015134
Alignment:
Q  236 agttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
    |||||| |||||||| |||||||||||||||||||| || ||||||  ||||||||||||    
T  11015193 agttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgt 11015134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 11005628 - 11005571
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
    |||| |||||||| |||||||||||||||||||| || |||||||||||  |||||||    
T  11005628 ttgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 47451607 - 47451570
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagt 268  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  47451607 gatatagttgaaatatgggtgatgaaagaatacaaagt 47451570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 48884178 - 48884245
Alignment:
Q  231 gatagagttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| |||||| |||| ||||||||||||||||||||||||    ||||||||||| |||||||||||    
T  48884178 gataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttct 48884245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 30130957 - 30130916
Alignment:
Q  243 atatgggtgatgaaagaatacaaagtgcagtcatcttggact 284  Q
    |||||||||||| ||||||||| |||||| ||||||||||||    
T  30130957 atatgggtgatgcaagaatacacagtgcattcatcttggact 30130916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 15349244 - 15349304
Alignment:
Q  238 ttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgttct 298  Q
    |||| ||||||||||||||||||||||||||| | || |||||||| || | |||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttct 15349304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 12195683 - 12195742
Alignment:
Q  236 agttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
    |||||| ||||||| ||||||||||||||||   || |||||||||||||| ||||||||    
T  12195683 agttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 12440111 - 12440170
Alignment:
Q  236 agttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaaaactcttgt 295  Q
    |||||| ||||||| ||||||||||||||||   || |||||||||||||| ||||||||    
T  12440111 agttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 4031628 - 4031578
Alignment:
Q  236 agttgatatatgggtgatgaaagaatacaaagtgcagtcatcttggactaa 286  Q
    |||||| |||||||| ||||||||||||||| |||| || |||||||||||    
T  4031628 agttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaa 4031578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 4962224 - 4962186
Alignment:
Q  233 tagagttgatatatgggtgatgaaagaatacaaagtgca 271  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  4962224 tagagttgaaatatgggtgatgaaagaatacaaactgca 4962186  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 10178273 - 10178221
Alignment:
Q  108 tttcatttaacggaaaggaaacttctagagattcctctcccaaatgatattga 160  Q
    |||||||||||  |||||||||||||||| |||| | ||||||||||| ||||    
T  10178273 tttcatttaacaaaaaggaaacttctagatattcttttcccaaatgatgttga 10178221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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