View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_115 (Length: 332)
Name: NF9985A_low_115
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_115 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 332
Target Start/End: Original strand, 6604971 - 6605280
Alignment:
| Q |
22 |
taagtaacataattatattgaaagcattttggcatacnnnnnnnccctctcctttgctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6604971 |
taagtaacataattatattgaaagcattttggcatactttttt-ccctctcctttgctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaa |
6605069 |
T |
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| Q |
122 |
gaatggagcatcctggagaaaaaccttcctggtgcatacttctcactttatttattataactatctcagcctaattaaaccaaccaactatctcactaaa |
221 |
Q |
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| T |
6605070 |
gaatggagcatcctggagaaaaaccttcctggtgcatacttctcactttatttattataactatctcagcctaattaaaccaaccaactatctcactaaa |
6605169 |
T |
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| Q |
222 |
taagcaatgtttattgtccattaatatttaatatgaaaataagtagcctattgagtaaataagtgtccgagttaatttacttacaagaaaggggaatcac |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6605170 |
taagcaatgtttattgtccattaatatttaatatgaaaataagtagcctattgagtaaataagtgtccgagttaatttacttacaagaaagggaaatcac |
6605269 |
T |
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| Q |
322 |
tcaaaatatga |
332 |
Q |
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||||||||||| |
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| T |
6605270 |
tcaaaatatga |
6605280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 35442557 - 35442638
Alignment:
| Q |
81 |
ctttgtaggttaagaaagattgggcaaaaaaggtacagcaagaatggagcatcctggagaaaaaccttcctggtgcatactt |
162 |
Q |
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| T |
35442557 |
ctttataggtaaaaaaaggttgggtgaaaaaggttcagcaagaatggagcatccttgagaaaagtcttcctggtacatactt |
35442638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 3698565 - 3698258
Alignment:
| Q |
22 |
taagtaacataattatattgaaagcattttggcatacnnnnnnnccctctcctttgctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaa |
121 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698565 |
taagtaacataattatattgaaagcattttggctta--ttttttccctctcctttgctcctttgtaggttaagaaagattgggcaaaaaaggtacagcaa |
3698468 |
T |
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| Q |
122 |
gaatggagcatcctggagaaaaaccttcctggtgcatacttctcactttatttattataactatctcagcctaattaaaccaacc-aactatctcactaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||| |
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| T |
3698467 |
gaatggagcatcctggagaaaaaccttcctggtgcatacttctcacttta-ttattataactatctcagtcaaattaaaccaaccaaactatctcactaa |
3698369 |
T |
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| Q |
221 |
ataagcaatgtttattgtccattaatatttaatatgaaaataagtagcctattgagtaaataagtgtccgagttaatttacttacaagaaaggggaatca |
320 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |
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| T |
3698368 |
ataagcaatgtttattgtcaattaatatttaatctgaaaataagtagcctattgagtaaataaatgtccgagttaatttacttgcaagaaagggaaatca |
3698269 |
T |
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| Q |
321 |
ctcaaaatatg |
331 |
Q |
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||| ||||||| |
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| T |
3698268 |
ctcgaaatatg |
3698258 |
T |
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