View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_12 (Length: 476)
Name: NF9985A_low_12
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 23 - 432
Target Start/End: Complemental strand, 38145626 - 38145217
Alignment:
| Q |
23 |
caacacctaagcttgtgcacaggcctgcagggtaaccaagaacagaacttttctcgtatattctgtaatagacttcaccgatcgtggcaccggattgaac |
122 |
Q |
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| T |
38145626 |
caacacctaagcttgtgcacaggcctgcagggtaaccaagaacagaacttttctcgtatattctgtaatagacttcaccgatagtggcaccggattgaac |
38145527 |
T |
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| Q |
123 |
ccaagcagtgttggttttagtgtcgatgcttatgccgcgaagtttgattaaatcgacaactatgaaaggtgtttcgcttttggaaacatatgaaagtcct |
222 |
Q |
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| T |
38145526 |
ccaagcagtgttggttttagtgtcgatgcttatgccgcgaagtttgattaaatcgacaactatgaaaggtgtttcgattttggaaacatatgaaagtcct |
38145427 |
T |
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| Q |
223 |
ccaatgagatggacatcacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaata |
322 |
Q |
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| T |
38145426 |
tcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaata |
38145327 |
T |
|
| Q |
323 |
tgaattcgggtttcggtgtagatggtgccaaacaccttaggttcattgctaaggaatcaaggatggttgcgaatgaaggttcatttggagtgtaaattgt |
422 |
Q |
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| T |
38145326 |
tgaattcgggtttcggtgtagatggtgccaaacaccttaggttcattgctaaggaatcaaggatggttgcgaatgaaggttcatttggagtgtaaattgt |
38145227 |
T |
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| Q |
423 |
tgtatgaaat |
432 |
Q |
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| T |
38145226 |
tgtatgaaat |
38145217 |
T |
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Back To:
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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 362
Target Start/End: Original strand, 11787329 - 11787533
Alignment:
| Q |
158 |
cgcgaagtttgattaaatcgacaactatgaaaggtgtttcgcttttggaaacatatgaaagtcctccaatgagatggacatcacttcttactcttagatg |
257 |
Q |
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||||||||||| || ||||| | ||||||||| |||||| ||| |||||||||||| |||||| || |||| || ||||||||||||||||||| |
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| T |
11787329 |
cgcgaagtttggctaggtcgacgattatgaaaggcgtttcgatttcggaaacatatgagagtccttcataatcatggccaccacttcttactcttagatg |
11787428 |
T |
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| Q |
258 |
gattccaagtttcttggagcaaattacggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaacac |
357 |
Q |
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| T |
11787429 |
aataccaagtttctttgaacaagtaacagctacttggacatgtgaatcggttaagggtgtgaatatgaattcgggttttggagcagaaggtaccaaatac |
11787528 |
T |
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| Q |
358 |
cttag |
362 |
Q |
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||||| |
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| T |
11787529 |
cttag |
11787533 |
T |
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