View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_120 (Length: 327)
Name: NF9985A_low_120
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_120 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 33905234 - 33905545
Alignment:
| Q |
10 |
agatgaatggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaagggaggtgatgctgttcaaatgatttgg |
109 |
Q |
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| T |
33905234 |
agatgaatggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaaggaaggtgatgctgttgaaatgatttgg |
33905333 |
T |
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| Q |
110 |
caagctgtttcacgtaaggttccttttatgaagttgaaaacaaacaggtctaggagattttttagagccctttatggtaataataaatataaggggcata |
209 |
Q |
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| T |
33905334 |
caagctgtttcacgtaaggttccttttatgaagttgaaaacaaacaggtctaggagattttttagagccctttatggtaataataaatataaggggcata |
33905433 |
T |
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| Q |
210 |
aatcaatacatgcaccacctaatttttggtgatattggtacatgaagttttgtctttagaaattcaagaatctttttatatacaatatagttatgatttt |
309 |
Q |
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| T |
33905434 |
aatcaatacatgcaccacctaatttttggtgatattggtacatgaagttttgtctttagaaattcaagaatgtttttatatacaatatagttatgatttt |
33905533 |
T |
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| Q |
310 |
gatagtgaaatt |
321 |
Q |
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|||||||||||| |
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| T |
33905534 |
gatagtgaaatt |
33905545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 9326358 - 9326228
Alignment:
| Q |
17 |
tggacaagaatgtggaacagattgaaagaagttgaaaaattctttgaatttcagttcccttctaagggaggtgatgctgttcaaatgatttggcaagctg |
116 |
Q |
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||||||| ||||||||||| |||||||| |||||| | |||||||||| | | || || ||||||| |||||||||||| ||||||||||||||||||| |
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| T |
9326358 |
tggacaaaaatgtggaacaagttgaaagaggttgaacatttctttgaatataattttccatctaaggaaggtgatgctgtacaaatgatttggcaagctg |
9326259 |
T |
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| Q |
117 |
tttcacgtaaggttccttttatgaagttgaa |
147 |
Q |
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|||||| ||| ||||||| |||||| ||||| |
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| T |
9326258 |
tttcacataaagttccttctatgaaattgaa |
9326228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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