View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_121 (Length: 326)
Name: NF9985A_low_121
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_121 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 5188609 - 5188291
Alignment:
| Q |
7 |
tttcattcatcatgcaacacaacgacgcaagggtttgatgcagattccaaatcccttcctatacagtatatatgaattattttattcatcaaaatgacag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5188609 |
tttcattcatcatgcaacacaacgacgcaagggtttgatgcagattccaaatcccttc-tatacagtatatatgaattattttattcatcaaaatgacag |
5188511 |
T |
|
| Q |
107 |
ctacgnnnnnnnnnggtacaaggaatattccgatgacataatattaattgacttggaatacttaattctcataaaaataagcatgctgaagtacgttgcc |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5188510 |
ctacgaaaaaaaaaggtacaaggaatattccgatgacataatattaattgacttggaatacttaattctcataaaaataagcatgctgaagtacgttgcc |
5188411 |
T |
|
| Q |
207 |
ttgcatatgccatatagtatattcttttagcaaatagtagatgccaacaataatagtggag-nnnnnnnnnggaagaagaaagaaaaataatagtgaagt |
305 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5188410 |
ttgcatatgccatatagtatatccttttagcaaatagtagatgccaacaataatagtggagttttttttttggaagaagaaagaaaaataatagtgaagt |
5188311 |
T |
|
| Q |
306 |
tatcgaatgggttggtctccc |
326 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
5188310 |
tatcgaat-ggttggtctccc |
5188291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University