View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_127 (Length: 324)

Name: NF9985A_low_127
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_127
NF9985A_low_127
[»] chr1 (16 HSPs)
chr1 (12-318)||(13244622-13244928)
chr1 (12-216)||(12963976-12964180)
chr1 (12-224)||(30368209-30368421)
chr1 (25-215)||(13271474-13271664)
chr1 (12-292)||(13100812-13101091)
chr1 (12-299)||(13080966-13081253)
chr1 (12-224)||(13094278-13094490)
chr1 (12-224)||(13070277-13070489)
chr1 (12-299)||(13085911-13086198)
chr1 (12-294)||(13007009-13007291)
chr1 (12-224)||(13129707-13129919)
chr1 (12-294)||(13204268-13204550)
chr1 (14-224)||(13161400-13161610)
chr1 (12-216)||(19279269-19279473)
chr1 (12-298)||(13065314-13065600)
chr1 (156-215)||(13010661-13010720)
[»] chr7 (1 HSPs)
chr7 (12-170)||(12164206-12164364)
[»] chr6 (5 HSPs)
chr6 (13-99)||(377572-377658)
chr6 (16-99)||(341859-341942)
chr6 (93-184)||(31380253-31380344)
chr6 (13-98)||(346845-346930)
chr6 (13-98)||(355504-355589)
[»] chr8 (1 HSPs)
chr8 (12-41)||(36668187-36668216)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 13244622 - 13244928
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||| || |||| |||||||||||||||||||||||||||    
T  13244622 aatatggggagatgattgcttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaat 13244721  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244722 gcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 13244821  T
Q  212 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataacaaagttgcaag 311  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  13244822 gtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaag 13244921  T
Q  312 tgtgatg 318  Q
    |||||||    
T  13244922 tgtgatg 13244928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 12963976 - 12964180
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  ||| |||| || || ||||| ||||||||||| ||||||    
T  12963976 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaat 12964075  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| |||||||||| |||| | ||||||||||    
T  12964076 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaag 12964175  T
Q  212 gtcac 216  Q
    |||||    
T  12964176 gtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 30368209 - 30368421
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||||||| |||||||||||||||| |||||| |||| |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  30368209 aatatggggagaagattgcatggaatttaagcctgagagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 30368308  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
     |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | |||||||||||||||| ||||||||| |||||||    
T  30368309 acaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaag 30368408  T
Q  212 gtcaccctgtaac 224  Q
    |||||||||||||    
T  30368409 gtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 13271664 - 13271474
Alignment:
Q  25 gattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgcaggtcctagaa 124  Q
    ||||||||||| ||||||||||| ||||||||||| | || ||||   ||| ||||||| || ||||||||||||||||| |||||||||||||||||||    
T  13271664 gattgcttggagtttaagcctgagagatggatatcagataaaggacaaattatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaa 13271565  T
Q  125 gttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 215  Q
    | ||| |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||    
T  13271564 gctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 13101091 - 13100812
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| | || |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13101091 aatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 13100992  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
     |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13100991 -caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaag 13100893  T
Q  212 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcattt 292  Q
    |||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| ||||||||||||||    
T  13100892 gtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 13080966 - 13081253
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||| | |||||||   ||| |||| || |||||||| ||||||||||| || |||    
T  13080966 aatatggggagaggattgcttggagtttaagcctgagagatggatatcagatagaggacaaattatacaagtgccgtcttataagttcatagcgtttaat 13081065  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
    |||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||  ||||||| ||| |||||||||||||    
T  13081066 gcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaag 13081165  T
Q  212 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 299  Q
    ||||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  13081166 gtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 13094490 - 13094278
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||||||||||||||     
T  13094490 aatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaac 13094391  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
     |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||||||||    
T  13094390 acaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaag 13094291  T
Q  212 gtcaccctgtaac 224  Q
    |||||||||||||    
T  13094290 gtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 13070277 - 13070489
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| |||| |  | ||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13070277 aatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaat 13070376  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
     ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13070377 acaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaag 13070476  T
Q  212 gtcaccctgtaac 224  Q
    |||||||||||||    
T  13070477 gtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 13086198 - 13085911
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    |||||||||  | ||| |||| ||||||||||| || ||||||||||| | || ||||   ||| | ||||| || |||| |||||||||||| || |||    
T  13086198 aatatggggtaaggatcgcttcgaatttaagcccgagagatggatatcagataaaggacatattttgcatgtaccatcttgcaagttcatagcatttaat 13086099  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||    
T  13086098 gcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaag 13085999  T
Q  212 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatataa 299  Q
    ||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||||||||||| |||||||||||    
T  13085998 gtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 13007291 - 13007009
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| | || |  ||||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13007291 aatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaat 13007192  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
     ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   ||||||| |||| ||||||||| ||    
T  13007191 acaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcag 13007092  T
Q  212 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 294  Q
    |||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| ||||||||||||||||    
T  13007091 gtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 13129919 - 13129707
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || |||||||||||| ||||||||||     
T  13129919 aatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaac 13129820  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
     |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  |||||||| |||||||||||||||||    
T  13129819 acaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaag 13129720  T
Q  212 gtcaccctgtaac 224  Q
    |||||||||||||    
T  13129719 gtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 13204550 - 13204268
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||| ||| |||||||||||||||| |||||| |||| |  | ||||  |||| ||||||| || ||||||||||||||||||||||||    
T  13204550 aatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaat 13204451  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
     ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||| |||| |||| || | |||||||    
T  13204450 acaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaag 13204351  T
Q  212 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttga 294  Q
    ||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| ||||||||||||||||    
T  13204350 gtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 13161610 - 13161400
Alignment:
Q  14 tatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaatgc 113  Q
    ||||||| ||||| ||| |||||||||||||||| ||||||||||| |  || ||||  ||| ||||||| || ||||||||||||||| |||||||  |    
T  13161610 tatggggggaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacac 13161511  T
Q  114 aggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggt 213  Q
    ||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||||||||||    
T  13161510 aggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggt 13161411  T
Q  214 caccctgtaac 224  Q
    |||| ||||||    
T  13161410 caccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 19279269 - 19279473
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||| || |||||| | ||||||  |||||| ||||||||||||| |||||||   ||| ||||||| || || |||||||||||||| || |||    
T  19279269 aatatggggtgatgattgcctagaatttcggcctgagagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaat 19279368  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
    |||||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||    
T  19279369 gcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaag 19279468  T
Q  212 gtcac 216  Q
    |||||    
T  19279469 gtcac 19279473  T

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Target: chr1; HSP #15
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 13065314 - 13065600
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||||||    || |||   ||| ||||||| |||||||||||||||||||||||||||    
T  13065314 aatatggggagaagactgcatggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagttcatagctttcaat 13065413  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaag 211  Q
    ||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  ||||||||||| |||||||  | ||||| |    
T  13065414 gcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagttttgcatacatttagtggatg 13065513  T
Q  212 gtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttgatata 298  Q
    |||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||||||||||||||||    
T  13065514 gtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttgatata 13065600  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  156 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 215  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 12164364 - 12164206
Alignment:
Q  12 aatatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttcatagctttcaat 111  Q
    ||||||||||||||||||||||||||||||||| || || ||||| ||    | |||||| || ||  |||| || |||||||||||||| ||||| |||    
T  12164364 aatatggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaat 12164265  T
Q  112 gcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgc 170  Q
    || || || || |||||| | || || ||||| |||||  || | ||||||||||||||    
T  12164264 gctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgc 12164206  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 377572 - 377658
Alignment:
Q  13 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 99  Q
    ||||||||||||||||||||||| || ||||| || ||||||||||| |  |||||  ||||||| ||||  |||||||| ||||||    
T  377572 atatggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagcattgttcatgaaccgtcttataagttc 377658  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 341859 - 341942
Alignment:
Q  16 tggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagttc 99  Q
    |||||| ||||||||||||| |||||||| || || ||||| || |  ||||||||||||||  |||  |||||||||||||||    
T  341859 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttc 341942  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  93 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 184  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 346930 - 346845
Alignment:
Q  13 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagtt 98  Q
    ||||||||| ||||||| ||||| || ||||| || ||||||||||| |  |||||||||||||| |||   || |||||||||||    
T  346930 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt 346845  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 355589 - 355504
Alignment:
Q  13 atatggggagaagattgcttggaatttaagcctgaaagatggatatcggttagaggaggcattgtacatgtcccgtcttacaagtt 98  Q
    ||||||||| ||||||| ||||| || ||||| || ||||||||||| |  |||||||||||||| |||   || |||||||||||    
T  355589 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtt 355504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 36668216 - 36668187
Alignment:
Q  12 aatatggggagaagattgcttggaatttaa 41  Q
    ||||||||||||||||||||||||||||||    
T  36668216 aatatggggagaagattgcttggaatttaa 36668187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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