View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_128 (Length: 323)
Name: NF9985A_low_128
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_128 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 34444329 - 34444044
Alignment:
| Q |
18 |
tccatactatcattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttgaagaagtgt |
117 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34444329 |
tccaaactaacattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttgaagaagtgt |
34444230 |
T |
|
| Q |
118 |
ttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatgtcccatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34444229 |
ttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatgtcccatct |
34444130 |
T |
|
| Q |
218 |
tttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34444129 |
tttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
34444044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 34437590 - 34437297
Alignment:
| Q |
10 |
aagaatattccatactatcattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttga |
109 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
34437590 |
aagaaaattccaaactatcattctcattccttggtgtagcagcattcctaataacttcaaatggtggtttatagccatctccactaacatctatttttga |
34437491 |
T |
|
| Q |
110 |
agaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatg |
209 |
Q |
| |
|
||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437490 |
agaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccattaaatgaaccaatg |
34437391 |
T |
|
| Q |
210 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| || ||||||| |
|
|
| T |
34437390 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaatgctgagataa |
34437297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University