View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_133 (Length: 319)
Name: NF9985A_low_133
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_133 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 32907352 - 32907519
Alignment:
| Q |
15 |
atgaatgaataaatcaatgaaaatcctgacaaaatactctcactttat--cctatattatgtgtgaacaattcaataatcctcccattaattgtcactcc |
112 |
Q |
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| T |
32907352 |
atgaatgaataaatcaatgaaaatcctgacaaaatactctcactttatatcctatattatgtatgaaccactcaataatcctcccactaattgtcactcc |
32907451 |
T |
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| Q |
113 |
tctcttggttagcaaatcagcagaattgttggcttccctattcactcctctcttttgtattttctgtc |
180 |
Q |
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| T |
32907452 |
tctcttggttagcaaatcagcagaattgttggcttccctgttcactcctctcttttgtattttctgtc |
32907519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 195 - 312
Target Start/End: Original strand, 32907580 - 32907697
Alignment:
| Q |
195 |
tgtagcatgtcttaaaacttaatatattaaaccttatatggagggtattctgccattggatggatttgcttccaggtaactgtaatggaatactactggc |
294 |
Q |
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| T |
32907580 |
tgtagcatgtcttaaaacttaatgtattaaactttatatggagggtattcttccattggatggatttgcttccaggtaattgtaatgaaatactactggc |
32907679 |
T |
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| Q |
295 |
tttacactattgaaatct |
312 |
Q |
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| T |
32907680 |
tttatactatcgaaatct |
32907697 |
T |
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