View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_135 (Length: 316)
Name: NF9985A_low_135
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_135 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 118 - 308
Target Start/End: Original strand, 31799212 - 31799402
Alignment:
| Q |
118 |
tagtatcattttcaaccacttatttgcacattcatgagactcttcttcttttaaaaatgtcacctctactctatctatattagtggcatttcgagccatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31799212 |
tagtatcattttcaaccacttatttgcacattcatgagactcttcttcttttaaaaatgtcacctctactctatctatattagtggcatttcgagccatc |
31799311 |
T |
|
| Q |
218 |
ccttcccatactaataagcggacttttggttcttttgcttgcatgcttgaaattcatctctcatataacatgtctggtttcaatattcttc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31799312 |
ccttcccatactaataagcggacttttggttcttttgcttgcatgcttgaaattcatctctcatataacatgtctggtttcaattttcttc |
31799402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University