View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_136 (Length: 316)
Name: NF9985A_low_136
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_136 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 46229010 - 46228696
Alignment:
| Q |
4 |
atccaatatcatttatagttgacaacaatgtca--------ccctaactaaacattacaaattcaattcttatatgtgtttactatctctaactcatgca |
95 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46229010 |
atccaatatcatttatagttgacaacaatgtgaagggccaaccctaactaaacattacaaattcaattcttatatgtgtttactatctctaactcatgca |
46228911 |
T |
|
| Q |
96 |
ctattgtttaccaaataaaaacaaaatcatttaagagattcggaaatataacttgtaagaggctaaaaacatattccaagtctttaaaaccgtttcacct |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||| |
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| T |
46228910 |
ctattgtttaccaaataaaaacaaaatcatttaagagattcggaaatataacttgtaggaggctaaaaatatattc-aagtctttaaaaccgtttcgcct |
46228812 |
T |
|
| Q |
196 |
aatagttttctgtactcataaaaaccattcagtggtgctattttttagtgggtcgtgaagcactcgtgaagtttattgtcgctgtaacaagcattttcct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
46228811 |
aatagttttctgtactcataaaaaccattcagtggtgctattttttagtgggtcgtgaagcattcgtgaagtttattgtcgttgtaacaagcattttcct |
46228712 |
T |
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| Q |
296 |
tttgcatgacgaactt |
311 |
Q |
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|||||||||||||||| |
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| T |
46228711 |
tttgcatgacgaactt |
46228696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 46229316 - 46229374
Alignment:
| Q |
236 |
ttttttagtgggtcgtgaagcactcgtgaagtttattgtcgctgtaacaagcattttcc |
294 |
Q |
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| T |
46229316 |
ttttttagtggttcgtgaagcactcgtgaagtttattgtcgctataacaagcattttcc |
46229374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 42036845 - 42036897
Alignment:
| Q |
245 |
gggtcgtgaagcactcgtgaagtttattgtcgctgtaacaagcattttccttt |
297 |
Q |
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||||||||||| | ||| ||||||| ||||||| ||||||||||||| ||||| |
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| T |
42036845 |
gggtcgtgaagaattcgggaagtttgttgtcgcagtaacaagcatttcccttt |
42036897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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