View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_14 (Length: 464)
Name: NF9985A_low_14
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_14 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Complemental strand, 26798443 - 26797998
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26798443 |
aaatgaatagtgatagtaataactaataatagtacttgtttgttggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaa |
26798344 |
T |
|
| Q |
109 |
tgttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26798343 |
tgttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaa |
26798244 |
T |
|
| Q |
209 |
atagcaaa-attttgaaggtaattaagagc-gtggagattgaattatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcg |
306 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26798243 |
atagaaaactttttgaaggtaattaagagctatggagattgaattatagaaatgattggaagtaagagctatatgaatgcaattaaggagtaaagactcg |
26798144 |
T |
|
| Q |
307 |
agaggatattagcatgt--aaagactca-------catgtgaatgaaataatgcttgttaatggacccatatcagacaaaataatagatatacaaagaat |
397 |
Q |
| |
|
||||||||||||||||| | | | | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26798143 |
agaggatattagcatgtgcatatagtaattaagagcatgtgaatgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaat |
26798044 |
T |
|
| Q |
398 |
agttgcacactttaaaagcaattggcatctttgaagtttgaatgata |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26798043 |
agttgcacactttaaaagcaattggcatctttg-agtttgaatgata |
26797998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 261 - 444
Target Start/End: Complemental strand, 26825930 - 26825738
Alignment:
| Q |
261 |
attggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgt---------aaagactcacatgtgaatgaaataatgc |
351 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
26825930 |
attggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaaagactcatatgtgaatgaaataatgc |
26825831 |
T |
|
| Q |
352 |
ttgttaatggacccatatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgata |
444 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26825830 |
ttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgata |
26825738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 26801351 - 26801250
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaa---taatggtttatggaactacatctgacaaaataataaatatacaaag |
105 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26801351 |
aaatgactagtaacagtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaag |
26801255 |
T |
|
| Q |
106 |
aaatg |
110 |
Q |
| |
|
||||| |
|
|
| T |
26801254 |
aaatg |
26801250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 26808901 - 26808800
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaa---taatggtttatggaactacatctgacaaaataataaatatacaaag |
105 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26808901 |
aaatgactagtaacagtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaag |
26808805 |
T |
|
| Q |
106 |
aaatg |
110 |
Q |
| |
|
||||| |
|
|
| T |
26808804 |
aaatg |
26808800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 26816291 - 26816190
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaa---taatggtttatggaactacatctgacaaaataataaatatacaaag |
105 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26816291 |
aaatgactagtaacagtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaag |
26816195 |
T |
|
| Q |
106 |
aaatg |
110 |
Q |
| |
|
||||| |
|
|
| T |
26816194 |
aaatg |
26816190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 26823928 - 26823827
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaa---taatggtttatggaactacatctgacaaaataataaatatacaaag |
105 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26823928 |
aaatgactagtaacagtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaag |
26823832 |
T |
|
| Q |
106 |
aaatg |
110 |
Q |
| |
|
||||| |
|
|
| T |
26823831 |
aaatg |
26823827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 26797722 - 26797624
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaa |
108 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
26797722 |
aaatgactagtaacagtaataactaataatagt---tgtttgttggctcaataatggtttatggagctacatctgacataacaataaatatacaaagaaa |
26797626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Complemental strand, 10218972 - 10218527
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10218972 |
aaatgaatagtgatagtaataactaataatagtacttgtttgttggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaa |
10218873 |
T |
|
| Q |
109 |
tgttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10218872 |
tgttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaa |
10218773 |
T |
|
| Q |
209 |
atagcaaa-attttgaaggtaattaagagc-gtggagattgaattatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcg |
306 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10218772 |
atagaaaactttttgaaggtaattaagagctatggagattgaattatagaaatgattggaagtaagagctatatgaatgcaattaaggagtaaagactcg |
10218673 |
T |
|
| Q |
307 |
agaggatattagcatgt--aaagactca-------catgtgaatgaaataatgcttgttaatggacccatatcagacaaaataatagatatacaaagaat |
397 |
Q |
| |
|
||||||||||||||||| | | | | | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10218672 |
agaggatattagcatgtgcatatagtaattaagagcatgtgaatgaaataatgcttgttattggacccacatcagacaaaataatagatatacaaagaat |
10218573 |
T |
|
| Q |
398 |
agttgcacactttaaaagcaattggcatctttgaagtttgaatgata |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10218572 |
agttgcacactttaaaagcaattggcatctttg-agtttgaatgata |
10218527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 10255866 - 10255639
Alignment:
| Q |
24 |
gtaataactaataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatgttgcacgcataaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255866 |
gtaataactaataatagtacttgtttgttggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatgttgcacgcataaa |
10255767 |
T |
|
| Q |
124 |
ttgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaaatagcaaaattttga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255766 |
ttgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaaatagcaaaattttga |
10255667 |
T |
|
| Q |
224 |
aggtaattaagagc-gtggagattgaat |
250 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
10255666 |
aggtaattaagagctatggagattgaat |
10255639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 10018372 - 10018145
Alignment:
| Q |
22 |
tagtaataactaataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatgttgcacgcata |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10018372 |
tagtaataactaataatagtacttgtttgttggctcaataatggtttatggaactacatctgacaa--taataaatatacaaagaaatgttgcacgcata |
10018275 |
T |
|
| Q |
122 |
aattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaaatagcaaaatttt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10018274 |
aattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgataaagttgcacacgtaaatagcaaaatttt |
10018175 |
T |
|
| Q |
222 |
gaaggtaattaagagc-gtggagattgaat |
250 |
Q |
| |
|
||||||||||||||| |||||||||||| |
|
|
| T |
10018174 |
aaaggtaattaagagctatggagattgaat |
10018145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 250 - 444
Target Start/End: Complemental strand, 10108748 - 10108545
Alignment:
| Q |
250 |
ttatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgt---------aaagactcacatgtgaa |
340 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
10108748 |
ttatagaaatgattggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaaagactcatatgtgaa |
10108649 |
T |
|
| Q |
341 |
tgaaataatgcttgttaatggacccatatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaat |
440 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10108648 |
tgaaataatgcttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaat |
10108549 |
T |
|
| Q |
441 |
gata |
444 |
Q |
| |
|
|||| |
|
|
| T |
10108548 |
gata |
10108545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 250 - 444
Target Start/End: Complemental strand, 9998968 - 9998779
Alignment:
| Q |
250 |
ttatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgtaaagactcacatgtgaatgaaataat |
349 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
9998968 |
ttatagaaatgattggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatata-----gtaaagactcatatgtgaatgaaataat |
9998874 |
T |
|
| Q |
350 |
gcttgttaatggacccatatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgata |
444 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9998873 |
gcttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgata |
9998779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 261 - 444
Target Start/End: Complemental strand, 10229976 - 10229784
Alignment:
| Q |
261 |
attggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgt---------aaagactcacatgtgaatgaaataatgc |
351 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
10229976 |
attggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaaagactcatatgtgaatgaaataatgc |
10229877 |
T |
|
| Q |
352 |
ttgttaatggacccatatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgata |
444 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10229876 |
ttgttaatggacccacatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgata |
10229784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 250 - 444
Target Start/End: Complemental strand, 10233582 - 10233379
Alignment:
| Q |
250 |
ttatataaatgattggaagtaagagctatatgaatgcaattaaggagttaagactcgagaggatattagcatgt---------aaagactcacatgtgaa |
340 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
10233582 |
ttatagaaatgattggaagtaagagctatgtgaatgcaattaaggagttaagactcgagaggatattagcatgtgcatatagtaaagactcatatgtgaa |
10233483 |
T |
|
| Q |
341 |
tgaaataatgcttgttaatggacccatatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaat |
440 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10233482 |
tgaaataatgcttgttaatggacccacatcagaaaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatttttgaagtttgaat |
10233383 |
T |
|
| Q |
441 |
gata |
444 |
Q |
| |
|
|||| |
|
|
| T |
10233382 |
gata |
10233379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 93 - 250
Target Start/End: Complemental strand, 10118748 - 10118590
Alignment:
| Q |
93 |
taaatatacaaagaaatgttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgat |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10118748 |
taaatatacaaagaaatgttgcacgcataaattgcaacttgcatctttgaaatatcttggacatcttgttattaaatatgtggttaattcatttgttgat |
10118649 |
T |
|
| Q |
193 |
aaagttgcacacgtaaatagcaaaattttgaaggtaattaagagc-gtggagattgaat |
250 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10118648 |
aaagctgcacacgtaaatagcaaaattttgaaggtaattaagagctatggagattgaat |
10118590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 10138141 - 10138042
Alignment:
| Q |
12 |
tgaatagtgatagtaataactaataatagtacttgtttggtggctcaataatggtttatggaac-tacatctgacaaaataataaatatacaaagaaatg |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10138141 |
tgaatagtaatagtaataactaataatagtacttgtttgttggctcaataatggtttatggaacttgcatctgacaaaataataaatatacaaagaaatg |
10138042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 344 - 444
Target Start/End: Complemental strand, 10439701 - 10439601
Alignment:
| Q |
344 |
aataatgcttgttaatggacccatatcagacaaaataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgat |
443 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
10439701 |
aataatgcttgtttatggacccacatcagacaaaataatagatatccaaagaaaagttgcacactttcaaagcaattggcattattaaagtttgaatgat |
10439602 |
T |
|
| Q |
444 |
a |
444 |
Q |
| |
|
| |
|
|
| T |
10439601 |
a |
10439601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 10122910 - 10122841
Alignment:
| Q |
24 |
gtaataactaataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataat |
93 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10122910 |
gtaataactaataatagtacttgtttgttggctcaataatggtttatggaactccatctgacaaaataat |
10122841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 10227974 - 10227873
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaa---taatggtttatggaactacatctgacaaaataataaatatacaaag |
105 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10227974 |
aaatgactagtaacagtaataactaataatagt---tgtttgttggctcaacaataatggtttatggaactacatctgacaaaataataaatatacaaag |
10227878 |
T |
|
| Q |
106 |
aaatg |
110 |
Q |
| |
|
||||| |
|
|
| T |
10227877 |
aaatg |
10227873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 10218251 - 10218153
Alignment:
| Q |
9 |
aaatgaatagtgatagtaataactaataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaa |
108 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
10218251 |
aaatgactagtaacagtaataactaataatagt---tgtttgttggctcaataatggtttatggagctacatctgacataacaataaatatacaaagaaa |
10218155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 10194858 - 10194761
Alignment:
| Q |
41 |
tacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatgttgcacgcataaattgcaacttgcatcttt |
140 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
10194858 |
tacttgtttgttggctca-taatggttaatggatctacatctgacaaaataata----tacaaggaaatgttgcacgcgtaaaatgcaacttacatcttt |
10194764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 11767702 - 11767635
Alignment:
| Q |
378 |
ataatagatatacaaagaatagttgcacactttaaaagcaattggcatctttgaagtttgaatgatat |
445 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11767702 |
ataatagatatacatagaaaagttgtacacttcaaaagcaattggcatctttgaagtttgaacgatat |
11767635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 10087975 - 10087878
Alignment:
| Q |
41 |
tacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaatgttgcacgcataaattgcaacttgcatcttt |
140 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||| |||| ||||||||||||||| ||||| ||||||||| |||| |||| |||||||||||||||| |
|
|
| T |
10087975 |
tacttgtttgttggctca-taatggttaatggatctacttctgacaaaataata----tacaaggaaatgttgtacgcgtaaaatgcaacttgcatcttt |
10087881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 10075865 - 10075813
Alignment:
| Q |
88 |
aataataaatatacaaagaaatgttgcacgcataaattgcaacttgcatcttt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
10075865 |
aataataaatatacaaagaaatgttgcacacataaaatgcaacttgcatcttt |
10075813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 10499803 - 10499749
Alignment:
| Q |
54 |
gctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaa |
108 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| |||||||||||||||||||||| |
|
|
| T |
10499803 |
gctcattaatggtttatggatccacatctgactaaataataaatatacaaagaaa |
10499749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 10122956 - 10122911
Alignment:
| Q |
22 |
tagtaataactaataatagtacttgtttggtggctcaataatggtt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
10122956 |
tagtaataactaataatagtacttgtttgttggctcaacaatggtt |
10122911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 10255912 - 10255867
Alignment:
| Q |
22 |
tagtaataactaataatagtacttgtttggtggctcaataatggtt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
10255912 |
tagtaataactaataatagtacttgtttgttggctcaacaatggtt |
10255867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 10018416 - 10018372
Alignment:
| Q |
22 |
tagtaataactaataatagtacttgtttggtggctcaataatggt |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10018416 |
tagtaataactaataatagtacttgtttgttggctcaacaatggt |
10018372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 10364768 - 10364800
Alignment:
| Q |
412 |
aaagcaattggcatctttgaagtttgaatgata |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10364768 |
aaagcaattggcatctttgaagtttgaatgata |
10364800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 436
Target Start/End: Complemental strand, 10499788 - 10499709
Alignment:
| Q |
358 |
atggacccatatcagacaaaataatagatatacaaagaatagttgcacactttaaaa-gcaattggcatctttgaagttt |
436 |
Q |
| |
|
||||| ||| ||| ||| |||||||| |||||||||||| |||| ||||| | |||| ||||||| |||||||||||||| |
|
|
| T |
10499788 |
atggatccacatctgactaaataataaatatacaaagaaaagtttcacacgtaaaaatgcaattgccatctttgaagttt |
10499709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 444
Target Start/End: Original strand, 10376828 - 10376860
Alignment:
| Q |
412 |
aaagcaattggcatctttgaagtttgaatgata |
444 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
10376828 |
aaaggaattggcatctttgaagtttgaatgata |
10376860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 51836 - 51969
Alignment:
| Q |
12 |
tgaatagtgatagtaataactaataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataa--atatacaaagaaat |
109 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
51836 |
tgaatagtaatagtaatagctaataatagtacttgtttgttggctcaataatggtttttggaactacatctgacaaaataataaatatataccaagaaat |
51935 |
T |
|
| Q |
110 |
gttgcacgcataaattgcaacttgcatctttgaa |
143 |
Q |
| |
|
| || | |||||| ||||||||| ||||||||| |
|
|
| T |
51936 |
atggcccacataaaatgcaacttgtatctttgaa |
51969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 26891681 - 26891605
Alignment:
| Q |
32 |
taataatagtacttgtttggtggctcaataatggtttatggaactacatctgacaaaataataaatatacaaagaaa |
108 |
Q |
| |
|
|||||||| |||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
26891681 |
taataataatactcgtttgttggctcattaatggattatggatctacatctgacaaaataataagtatataaagaaa |
26891605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 11484173 - 11484132
Alignment:
| Q |
75 |
ctacatctgacaaaataataaatatacaaagaaatgttgcac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11484173 |
ctacatctgacaaaataataaatatacaaagaaaagttgcac |
11484132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University