View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_15 (Length: 452)
Name: NF9985A_low_15
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 360
Target Start/End: Original strand, 40809993 - 40810353
Alignment:
| Q |
6 |
agtttaattgtaagggattttaattgagcgaaggttagtgtttgagaagaatcggcatctataagagcggttttgtttggggaagaagtgactttgttga |
105 |
Q |
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| T |
40809993 |
agtttaattgtaagggattttaattgagcgaaggttagtgtttgagaagaatcggcatctataagagcggttttgtttggggaagaagtgactttgttga |
40810092 |
T |
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| Q |
106 |
agaggtgtgttacgagagagaggtttggattttttggtaagataagggaaggtcttaaggacctgtatattccatctgaaccgtaacctgatttctgcat |
205 |
Q |
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| T |
40810093 |
agaggtgtgttacgagagagaggtttggattttttggtaagataagggaaggtcttaaggacctgtatattccatctgaaccgtaacctgatttctgcat |
40810192 |
T |
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| Q |
206 |
tggaaaagtacttttttgaaaatcggtttttggttatgagttttgaacaaacagagatcttctagtgctgtggtgatgatgctgtctttgtatgttgtat |
305 |
Q |
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| T |
40810193 |
tggaaaagtacttttttgaaaatcgctttttggttttgagttttgaacaaacagggattttctagtgctttggtgatgatgctgtctttgtattttgtat |
40810292 |
T |
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| Q |
306 |
tctagtgta------tgagattaatctgacaaagctgaaaatgagggaaacaagtggaagg |
360 |
Q |
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| T |
40810293 |
tctagtgtatcagattgagattaatctgacaaagctgaaaatgagggaaacaagtggaagg |
40810353 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 30937430 - 30937391
Alignment:
| Q |
320 |
ttaatctgacaaagctgaaaatgagggaaacaagtggaagg |
360 |
Q |
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| T |
30937430 |
ttaatctgacaa-gctgaaaacgagggaaacaagtggaagg |
30937391 |
T |
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