View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_150 (Length: 305)

Name: NF9985A_low_150
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_150
NF9985A_low_150
[»] chr3 (3 HSPs)
chr3 (12-305)||(15513433-15513727)
chr3 (43-85)||(15514277-15514319)
chr3 (207-292)||(12767337-12767422)
[»] chr5 (4 HSPs)
chr5 (235-305)||(9962954-9963024)
chr5 (234-305)||(18398599-18398670)
chr5 (211-305)||(31536419-31536513)
chr5 (207-292)||(36289589-36289674)
[»] chr2 (7 HSPs)
chr2 (207-305)||(12670743-12670841)
chr2 (208-292)||(10633364-10633448)
chr2 (190-305)||(30481661-30481776)
chr2 (251-305)||(33710553-33710607)
chr2 (251-305)||(34557293-34557347)
chr2 (207-276)||(4422823-4422892)
chr2 (207-263)||(21488865-21488921)
[»] chr8 (6 HSPs)
chr8 (234-287)||(9030583-9030636)
chr8 (249-305)||(37616265-37616321)
chr8 (204-305)||(8238727-8238828)
chr8 (251-292)||(10340283-10340324)
chr8 (234-290)||(10340211-10340267)
chr8 (236-264)||(36203407-36203435)
[»] chr7 (5 HSPs)
chr7 (209-264)||(11329505-11329560)
chr7 (191-286)||(25690712-25690807)
chr7 (207-305)||(16780773-16780871)
chr7 (234-305)||(41195668-41195739)
chr7 (234-302)||(30357895-30357963)
[»] chr4 (5 HSPs)
chr4 (190-305)||(40423307-40423422)
chr4 (251-298)||(43115575-43115622)
chr4 (256-305)||(53449054-53449103)
chr4 (206-264)||(25844267-25844325)
chr4 (234-282)||(40421951-40421999)
[»] chr1 (3 HSPs)
chr1 (252-305)||(39126966-39127019)
chr1 (251-305)||(25485009-25485063)
chr1 (229-305)||(34062624-34062700)
[»] scaffold0110 (1 HSPs)
scaffold0110 (249-305)||(31363-31419)
[»] chr6 (1 HSPs)
chr6 (251-305)||(33617713-33617767)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 15513727 - 15513433
Alignment:
Q  12 atgaagtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513727 atgaggtccattgaaatgccctttccatttccatcaacctaggttgtgatacaaacataatagtagacccttacaaaaataaaacaagggaaagattatt 15513628  T
Q  112 gttcttcttcctttgagaattactcatttccttaatttaatgtgatttaactcatgttcggca-nnnnnnnnnnacaataagttaattcatgctagcact 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||           | ||||||||||||||||||||||||    
T  15513627 gttcttcttcctttgagaattactcatttccttaatttaatgtgatttaactcacgttcggcatttttttttttataataagttaattcatgctagcact 15513528  T
Q  211 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513527 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 15513433  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 15514319 - 15514277
Alignment:
Q  43 catcaacctaggttgtgatacaaacataatagtagacccttac 85  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  15514319 catcaacctaggttgcgatacaaacataatagtagacccttac 15514277  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 292
Target Start/End: Original strand, 12767337 - 12767422
Alignment:
Q  207 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 292  Q
    ||||| ||||||||||| |   |||| |||||||||||||  | |||||||||||||  | ||||||||| ||| |||||||||||    
T  12767337 cacttctaagatcggttgatccgacttaaaaagtgattgaaacgatcttaaaagtgttagcgtgagttaactcaagttgaaaaatg 12767422  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 9962954 - 9963024
Alignment:
Q  235 aaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    |||||||||||| |||||||||||||||||  |||||||||| | ||| ||||||||| ||||||| ||||    
T  9962954 aaaagtgattgaatcaatcttaaaagtgtcattgtgagttaacttacgctgaaaaatgccgaacgtaagtt 9963024  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 18398599 - 18398670
Alignment:
Q  234 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||| |||  | |||||||||||||| |||| |||||| |||||||||||||| |||| ||||||||    
T  18398599 aaaaagtgaatgaaccgatcttaaaagtgtcagtgtaagttaactcacgttgaaaaatatcgagcgtgagtt 18398670  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 305
Target Start/End: Original strand, 31536419 - 31536513
Alignment:
Q  211 tttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||| ||||||  |||| ||||| | |||||  | ||||||||| | || ||||||||||| || |||| |||||||| |||||||||||    
T  31536419 tttaagatcagttaaaccgacttaaaaaattattgaaccgatcttaaaaatatcagtgtgagttaactctcgttaaaaaatgttgaacgtgagtt 31536513  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 36289674 - 36289589
Alignment:
Q  207 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 292  Q
    ||||||||||||   ||||| ||||| ||||||||||| | || ||||||||||||||  |||||  ||| ||||| |||||||||    
T  36289674 cacttttaagattcattaaactgacttaaaaagtgattaaatcgatcttaaaagtgtcaatgtgaactaactcacgctgaaaaatg 36289589  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 12670841 - 12670743
Alignment:
Q  207 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||||||||||| |   | || ||||| |||||||  | |||||||||||||| | ||||||||| |||||||| ||||||||||| |||||||    
T  12670841 cacttttaagatcggttgagtcggcttaaaaattgattgaaccgatcttaaaagtgtcagcgtgagttaagtcacgttgcaaaatgtcgaatgtgagtt 12670743  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 10633448 - 10633364
Alignment:
Q  208 acttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 292  Q
    |||||||||||||||| ||  |||| ||||| ||||||| |||||| | ||||  ||  |||||||||| |||||||||||||||    
T  10633448 acttttaagatcggttgaaacgacttaaaaattgattgaatcaatcctcaaaggatcactgtgagttaactcacgttgaaaaatg 10633364  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 305
Target Start/End: Complemental strand, 30481776 - 30481661
Alignment:
Q  190 aagttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 289  Q
    ||||||||| |  |||| ||||||||||| |||| || || || ||||| | |||||    |||||||||||| | ||||||||||| ||||| | ||||    
T  30481776 aagttaatttacactagaacttttaagataggttgaattggcttaaaaaattattgaactgatcttaaaagtgccagtgtgagttaactcacgctaaaaa 30481677  T
Q  290 atgtcgaacgtgagtt 305  Q
    ||||||||| ||||||    
T  30481676 atgtcgaacatgagtt 30481661  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 33710607 - 33710553
Alignment:
Q  251 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    |||||||||||||| | || |||||| ||||| ||||||||||||||||| ||||    
T  33710607 atcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgaacgtaagtt 33710553  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 34557347 - 34557293
Alignment:
Q  251 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||||||  |||||||||||| ||||| ||||||||||||| || |||||    
T  34557347 atcttaaaagtgctggtgtgagttaactcacgctgaaaaatgtcgagcgagagtt 34557293  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 4422823 - 4422892
Alignment:
Q  207 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaa 276  Q
    ||||||||||||||||| |   |||| |||||||||||||| | |||| ||||||| ||| |||||||||    
T  4422823 cacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtgacggcgtgagttaa 4422892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 21488921 - 21488865
Alignment:
Q  207 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgt 263  Q
    ||||||||||||||||| || ||||| ||||| |||||||  | |||||||||||||    
T  21488921 cacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgt 21488865  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 9030636 - 9030583
Alignment:
Q  234 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaa 287  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  9030636 aaaaagtgattgaatcgatcttaaaagtgtcggtgtgagttaactcacgctgaa 9030583  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 37616321 - 37616265
Alignment:
Q  249 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    |||||||||||||||| | |||||||||  |||| ||||||||||||||||||||||    
T  37616321 caatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcgaacgtgagtt 37616265  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 305
Target Start/End: Complemental strand, 8238828 - 8238727
Alignment:
Q  204 tagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgag 303  Q
    |||||||||||||||||||| |   ||||||||||||||||||    |||| ||||||||| | ||||||||| |  || |||||||| |||| ||||||    
T  8238828 tagcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaactaccgctgaaaaatatcgagcgtgag 8238729  T
Q  304 tt 305  Q
    ||    
T  8238728 tt 8238727  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 10340283 - 10340324
Alignment:
Q  251 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatg 292  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
T  10340283 atcttaaaagtgtcagcgtgagttaactcacgttgaaaaatg 10340324  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 10340267 - 10340211
Alignment:
Q  234 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaa 290  Q
    ||||| ||||||| || |||| ||||||||| ||||||||||| ||||| |||||||    
T  10340267 aaaaaatgattgaatcgatctaaaaagtgtcagtgtgagttaactcacgctgaaaaa 10340211  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 36203407 - 36203435
Alignment:
Q  236 aaagtgattgagtcaatcttaaaagtgtc 264  Q
    |||||||||||||||||||||||||||||    
T  36203407 aaagtgattgagtcaatcttaaaagtgtc 36203435  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 11329560 - 11329505
Alignment:
Q  209 cttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 264  Q
    ||||||||||||||||||  |||| |||||||||| || |||||||||||||||||    
T  11329560 cttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagtgtc 11329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 25690807 - 25690712
Alignment:
Q  191 agttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttga 286  Q
    ||||||||||||||  ||||||||||||||||| ||  | || |||||||||||||  | |||| ||||||||| | ||||||||| ||| |||||    
T  25690807 agttaattcatgctgacacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaactcatgttga 25690712  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 305
Target Start/End: Original strand, 16780773 - 16780871
Alignment:
Q  207 cacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||||||||||| ||  |||| |||||||||||||  | |||||||||||| | | || |||||| ||| | ||||||||||||| | ||||||    
T  16780773 cacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaatgtcgagcatgagtt 16780871  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 41195739 - 41195668
Alignment:
Q  234 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||||||| |||| |||||||||||| | ||||||||| | ||| | ||||||| ||| ||||||||    
T  41195739 aaaaagtgattgaatcaaccttaaaagtgtcagcgtgagttaactaacgctaaaaaatgccgagcgtgagtt 41195668  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 30357895 - 30357963
Alignment:
Q  234 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtga 302  Q
    ||||||||| ||| ||||||| |||||||||||||||| |||  |  || ||||||||| |||||||||    
T  30357895 aaaaagtgagtgaatcaatctaaaaagtgtcggtgtgaattagctaccgatgaaaaatgccgaacgtga 30357963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 305
Target Start/End: Original strand, 40423307 - 40423422
Alignment:
Q  190 aagttaattcatgctagcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaa 289  Q
    ||||||| |||||||  ||||||||||||  ||| ||  |||| |||||||||||||  | ||||||||| |||| | ||||||||||||||| | ||||    
T  40423307 aagttaactcatgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcagcgtgagttaattcacgcttaaaa 40423406  T
Q  290 atgtcgaacgtgagtt 305  Q
    |||  || ||||||||    
T  40423407 atgctgagcgtgagtt 40423422  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 43115622 - 43115575
Alignment:
Q  251 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaac 298  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  43115622 atcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcgaac 43115575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 53449103 - 53449054
Alignment:
Q  256 aaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||||| ||||||||| |||| ||||||||||||||| |||||||    
T  53449103 aaaagtgtcggcgtgagttaactcacattgaaaaatgtcgaatgtgagtt 53449054  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 25844267 - 25844325
Alignment:
Q  206 gcacttttaagatcggttaaagtgactaaaaaagtgattgagtcaatcttaaaagtgtc 264  Q
    |||||||||||||||||| ||  | || |||||| |||||| |||||||||||||||||    
T  25844267 gcacttttaagatcggttgaaccggcttaaaaagcgattgaatcaatcttaaaagtgtc 25844325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 40421951 - 40421999
Alignment:
Q  234 aaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacg 282  Q
    |||||||||||||   ||||||||||||||| ||||||||||| |||||    
T  40421951 aaaaagtgattgaactaatcttaaaagtgtcagtgtgagttaactcacg 40421999  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 39126966 - 39127019
Alignment:
Q  252 tcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||||||| | ||||||||| ||||| ||||||||||||| ||||||||    
T  39126966 tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgagcgtgagtt 39127019  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 25485009 - 25485063
Alignment:
Q  251 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    |||||||||||| | | ||||||||| ||||| || |||||||||||||||||||    
T  25485009 atcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagtt 25485063  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 34062700 - 34062624
Alignment:
Q  229 gactaaaaaagtgattgagtcaatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    |||| |||||||||||||  | || ||||||||||| | ||||||| | ||||| |||||||||| || ||||||||    
T  34062700 gacttaaaaagtgattgaaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaatgttgagcgtgagtt 34062624  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 31419 - 31363
Alignment:
Q  249 caatcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||||| |||  ||||||||||| ||||| ||||||||| ||||||||||||    
T  31419 caatcttaaaaatgtatgtgtgagttaactcacgctgaaaaatgccgaacgtgagtt 31363  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 33617713 - 33617767
Alignment:
Q  251 atcttaaaagtgtcggtgtgagttaattcacgttgaaaaatgtcgaacgtgagtt 305  Q
    ||||||||||| ||| | | ||||||||||||||||||||||||||  |||||||    
T  33617713 atcttaaaagtatcgctatcagttaattcacgttgaaaaatgtcgagtgtgagtt 33617767  T

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