View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_159 (Length: 300)
Name: NF9985A_low_159
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_159 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 43408374 - 43408104
Alignment:
| Q |
11 |
cacagaaacaggtgcagatgatgactcctgctgaaggtagtggttttgagtgtgaattggggctgatctcctcctcataggtacccatatctgaataagg |
110 |
Q |
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| T |
43408374 |
cacagaaacaggtgcagatgatgactcctgctgaaggtagtggttttgagtgtgaattagggctgatctcctcctcataggtacccatatctgaataagg |
43408275 |
T |
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| Q |
111 |
acgttgttggatgagttctttgtgtactcttttaagtaaccaacagcaaccactaatctttctttgacagatgttgttggacctggatttgccctaggcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408274 |
acgttgttggatgagttctttgtgtactcttttaagtaaccaacagcaaccactaatctttctttgacagatgttgttggacctggatttgccctaggcc |
43408175 |
T |
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| Q |
211 |
caatccaccatctcttcccaacaacaaaaccactttcctgctgatcatcatgatttgctgctggagcagtg |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408174 |
caatccaccatctcttcccaacaacaaaaccactttcctgctgatcatcatgatttgctgctggagcagtg |
43408104 |
T |
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