View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_166 (Length: 293)
Name: NF9985A_low_166
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_166 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 4512629 - 4512911
Alignment:
| Q |
6 |
ctagattattcttataattcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacac |
105 |
Q |
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| T |
4512629 |
ctagattactcttataattcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacac |
4512728 |
T |
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| Q |
106 |
gaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtccactnnnnnnnnnnnnnnnnnnntcggagagaaaagaagttt |
205 |
Q |
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| T |
4512729 |
gaacctgttgagaaacttgtagatgctgttaaagtacaatctctgtctcctattcgtccactcacacacaagcacacacactcggagagaaaagaagttt |
4512828 |
T |
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| Q |
206 |
caaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaactt |
288 |
Q |
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| T |
4512829 |
caaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaactt |
4512911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 43206699 - 43206652
Alignment:
| Q |
67 |
tcacttcaacatttcaagaagccatgggctcatgaacacgaacctgtt |
114 |
Q |
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| T |
43206699 |
tcacttcaacacttcaagaagccttgggctcatgaacacgagcctgtt |
43206652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 43432742 - 43432638
Alignment:
| Q |
38 |
agggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaacttgtagatgctgttaa |
137 |
Q |
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| T |
43432742 |
agggattgattgtcagttcccgtaaagaatcactccaacatttcaagaagccgtgggctcatgaacacgaacctgttaaaaaccttcttgatgctgttaa |
43432643 |
T |
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| Q |
138 |
agtac |
142 |
Q |
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|||| |
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| T |
43432642 |
tgtac |
43432638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 3533801 - 3533733
Alignment:
| Q |
205 |
tcaaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagg |
274 |
Q |
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| T |
3533801 |
tcaaatttctcatatttgaatgttttctttt-cggcaaattaagccaacagtgttgattggaatatcagg |
3533733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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