View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_17 (Length: 443)

Name: NF9985A_low_17
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_17
NF9985A_low_17
[»] chr8 (9 HSPs)
chr8 (12-440)||(12287209-12287634)
chr8 (63-440)||(12266675-12267055)
chr8 (63-440)||(12282401-12282781)
chr8 (361-440)||(12256885-12256964)
chr8 (361-440)||(12264277-12264356)
chr8 (361-440)||(12270889-12270968)
chr8 (107-182)||(12270659-12270734)
chr8 (107-182)||(12256650-12256725)
chr8 (107-182)||(12264042-12264117)
[»] chr3 (3 HSPs)
chr3 (286-440)||(29197535-29197690)
chr3 (129-230)||(29197446-29197546)
chr3 (14-76)||(29197351-29197413)


Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Original strand, 12287209 - 12287634
Alignment:
Q  12 aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  12287209 aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaacgtatattt-gct 12287307  T
Q  112 ttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctacact 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||| |||    
T  12287308 ttttcaaaccaaatttcaaatacactgaaactacacaccaattacactct--ctttctttccctctttctcgtcactttccaaatcaaaatctctaaact 12287405  T
Q  212 taagcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacattcattcttaaagtacta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12287406 taagcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacaatcattcttaaagtacta 12287505  T
Q  312 acacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaact 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12287506 acacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaatt 12287605  T
Q  412 gaggatgcatatgttgttgttcgaggtga 440  Q
    |||||||||||||||||||||||||||||    
T  12287606 gaggatgcatatgttgttgttcgaggtga 12287634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 63 - 440
Target Start/End: Original strand, 12266675 - 12267055
Alignment:
Q  63 ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt 162  Q
    |||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||      
T  12266675 ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactc-g 12266773  T
Q  163 tctttctttccctctttctcctcactttccaaatcaaaatctctacacttaagcttattatatattcacacaacttattacataacacctcaattccatc 262  Q
    | ||||| |||||||||||| |||||||||| ||||||||| | |  ||||||||||||||||||| ||||||||||| |||||||||||||||||  ||    
T  12266774 tatttctctccctctttctcatcactttccatatcaaaatcccaaaccttaagcttattatatatttacacaacttataacataacacctcaattcactc 12266873  T
Q  263 aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca--cacatttgtgcacaac-actattaaattctatacgatgggtgtag 358  Q
    | || ||  |||||| ||||| |||||| |||||||||||| |  | ||||||   |  ||| | |||||| |  |||||||||| ||| ||||||||||    
T  12266874 acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag 12266973  T
Q  359 cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 440  Q
    ||||||  ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||    
T  12266974 cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtga 12267055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 63 - 440
Target Start/End: Original strand, 12282401 - 12282781
Alignment:
Q  63 ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt 162  Q
    |||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||      
T  12282401 ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactc-g 12282499  T
Q  163 tctttctttccctctttctcctcactttccaaatcaaaatctctacacttaagcttattatatattcacacaacttattacataacacctcaattccatc 262  Q
    | ||||| |||||||||||| |||||||||| ||||||||| | |  ||||| ||||||||||||||||||||||||| |||||||||||||||||  ||    
T  12282500 tatttctctccctctttctcatcactttccatatcaaaatcccaaaccttaaccttattatatattcacacaacttataacataacacctcaattcactc 12282599  T
Q  263 aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaaca--cacatttgtgcacaac-actattaaattctatacgatgggtgtag 358  Q
    | || ||  |||||| ||||| |||||| |||||||||||| |  | ||||||   |  ||| | |||||| |  |||||||||| ||| ||||||||||    
T  12282600 acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag 12282699  T
Q  359 cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 440  Q
    ||||||  ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||    
T  12282700 cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtga 12282781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 12256885 - 12256964
Alignment:
Q  361 tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 440  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  12256885 tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtga 12256964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 12264277 - 12264356
Alignment:
Q  361 tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 440  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  12264277 tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtga 12264356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 12270889 - 12270968
Alignment:
Q  361 tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 440  Q
    ||||| ||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  12270889 tcacaaacattagaaattacgattatatctggagaaaatattcatgtaacagaggatgcatacgttgttgttcgaggtga 12270968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 12270659 - 12270734
Alignment:
Q  107 ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc 182  Q
    |||||||| |||| || | |||||||||| |||| | || |||||||||||||||||||||||| |||||||||||    
T  12270659 ttgcttttccaaatcataattcaaatacattgaaccaaccaaccaattacactctttctttcttcccctctttctc 12270734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 12256650 - 12256725
Alignment:
Q  107 ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc 182  Q
    ||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| ||||||    
T  12256650 ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc 12256725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 12264042 - 12264117
Alignment:
Q  107 ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc 182  Q
    ||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| ||||||    
T  12264042 ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc 12264117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 440
Target Start/End: Original strand, 29197535 - 29197690
Alignment:
Q  286 aatatacattcattctt-aaagtactaacacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggtt 384  Q
    |||||| |||||||||| |||||||  |||||   ||||||||||||  || ||||| | ||| |||||| |||| ||||  |||||||||||||| |||    
T  29197535 aatatatattcattctttaaagtacacacacattcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataacagtt 29197634  T
Q  385 atatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtga 440  Q
    ||| |||| |||||||||||| |||||||||||||||| ||||| |||||||||||    
T  29197635 ataaccggtgaaaatattcatataactgaggatgcatacgttgtcgttcgaggtga 29197690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 29197446 - 29197546
Alignment:
Q  129 aaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctacacttaagcttattatatatt 228  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||| | | | ||||||||||| ||||||||    
T  29197446 aaatacaccgaaacaacaaaccaattacactctttctttctttccctctttctcaccactttccatatcaaaa-cccaaaacttaagcttaatatatatt 29197544  T
Q  229 ca 230  Q
    ||    
T  29197545 ca 29197546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 29197351 - 29197413
Alignment:
Q  14 tatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttataca 76  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  29197351 tatcaaccaaacagcgtattagcggatatatccacggaattgtcttgtgctgcaagtaataca 29197413  T

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